View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19830_high_5 (Length: 286)

Name: NF19830_high_5
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19830_high_5
NF19830_high_5
[»] chr4 (8 HSPs)
chr4 (8-286)||(21635985-21636263)
chr4 (24-132)||(6121909-6122017)
chr4 (24-132)||(48336269-48336377)
chr4 (24-132)||(53337376-53337484)
chr4 (27-132)||(33621805-33621910)
chr4 (24-132)||(3372127-3372235)
chr4 (24-132)||(3992982-3993090)
chr4 (24-132)||(47833617-47833725)
[»] chr7 (11 HSPs)
chr7 (54-132)||(4790284-4790362)
chr7 (23-132)||(94334-94443)
chr7 (24-132)||(1565745-1565853)
chr7 (24-132)||(1738463-1738571)
chr7 (24-132)||(7240755-7240863)
chr7 (24-132)||(7482231-7482339)
chr7 (24-132)||(31319415-31319523)
chr7 (24-132)||(36583401-36583509)
chr7 (24-132)||(38063929-38064037)
chr7 (24-132)||(38441466-38441574)
chr7 (24-132)||(46840866-46840974)
[»] chr5 (6 HSPs)
chr5 (54-131)||(2629561-2629638)
chr5 (53-132)||(6126859-6126938)
chr5 (28-107)||(3549588-3549667)
chr5 (37-74)||(4749838-4749875)
chr5 (83-132)||(37642019-37642068)
chr5 (24-132)||(9395356-9395464)
[»] chr8 (12 HSPs)
chr8 (54-132)||(8587206-8587284)
chr8 (24-132)||(3304294-3304402)
chr8 (24-132)||(12763670-12763778)
chr8 (24-132)||(39571219-39571327)
chr8 (24-132)||(44498203-44498311)
chr8 (24-132)||(54628-54736)
chr8 (24-132)||(2890178-2890286)
chr8 (24-132)||(6552661-6552769)
chr8 (24-132)||(7785794-7785902)
chr8 (24-132)||(32114491-32114599)
chr8 (24-132)||(32211379-32211487)
chr8 (24-132)||(33289277-33289385)
[»] chr2 (12 HSPs)
chr2 (54-132)||(41492912-41492990)
chr2 (24-132)||(12337953-12338061)
chr2 (24-132)||(13344490-13344598)
chr2 (32-132)||(1912838-1912938)
chr2 (24-132)||(3055564-3055672)
chr2 (24-132)||(6648535-6648643)
chr2 (24-132)||(13197726-13197834)
chr2 (24-132)||(15896848-15896956)
chr2 (24-132)||(37990029-37990137)
chr2 (24-132)||(41478655-41478763)
chr2 (24-132)||(44397553-44397661)
chr2 (24-132)||(44398692-44398800)
[»] chr1 (12 HSPs)
chr1 (24-89)||(3564229-3564294)
chr1 (29-74)||(28017932-28017977)
chr1 (24-132)||(34042702-34042810)
chr1 (93-132)||(44953079-44953118)
chr1 (23-132)||(14984842-14984951)
chr1 (24-132)||(9981653-9981761)
chr1 (24-128)||(23278021-23278125)
chr1 (24-132)||(27159374-27159482)
chr1 (24-132)||(31842811-31842919)
chr1 (24-132)||(39401982-39402090)
chr1 (24-132)||(44668109-44668217)
chr1 (24-132)||(47216715-47216823)
[»] scaffold0204 (1 HSPs)
scaffold0204 (24-132)||(23791-23899)
[»] chr6 (12 HSPs)
chr6 (83-143)||(7596982-7597042)
chr6 (24-132)||(33052810-33052918)
chr6 (54-129)||(6068959-6069034)
chr6 (83-129)||(33393165-33393211)
chr6 (83-132)||(6068631-6068680)
chr6 (24-132)||(2830341-2830449)
chr6 (24-132)||(6330121-6330229)
chr6 (24-132)||(8382985-8383093)
chr6 (24-132)||(9644702-9644810)
chr6 (24-132)||(9650719-9650827)
chr6 (24-132)||(11572161-11572269)
chr6 (24-132)||(26602329-26602437)
[»] chr3 (14 HSPs)
chr3 (33-132)||(34988090-34988189)
chr3 (29-75)||(25394348-25394394)
chr3 (54-132)||(33942948-33943026)
chr3 (83-132)||(8437490-8437539)
chr3 (31-132)||(9582975-9583076)
chr3 (24-132)||(10297985-10298093)
chr3 (33-101)||(11508387-11508455)
chr3 (24-132)||(17653718-17653826)
chr3 (24-132)||(19557068-19557176)
chr3 (24-132)||(22721937-22722045)
chr3 (24-132)||(37508927-37509035)
chr3 (24-132)||(38964398-38964506)
chr3 (24-132)||(44785412-44785520)
chr3 (24-132)||(49823397-49823505)
[»] scaffold0464 (1 HSPs)
scaffold0464 (83-132)||(6147-6196)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 21636263 - 21635985
Alignment:
Q  8 caatcattctcatactctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaactttt 107  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||  || ||||||||  |||||||||||||||    
T  21636263 caatcattctcataccctccggttctatttataagagacatttgaatcaacaaaaattaatgtatttgcttcaattttttaacctgatacatcaactttt 21636164  T
Q  108 atcgactcaaatttttcttataaattgtattggaggaagcatgtgttaagatatatgttgttaacnnnnnnnnnctccaaaaagtttaatggttaaactc 207  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  21636163 atcgactcaaatttttcttataaattgtatcggaggaaatatgtgttaagatatatgttgttaac-ttttttttctccaaaaagtttaatggttaaactc 21636065  T
Q  208 a-cccataattacaaagaaaaaagcttattgtgcattcgaaccaacacaagaattaattaatgttgctgagtcatttcat 286  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21636064 accccataattataaagaaaaaagcttattgtgcattcgaaccaacacaagaattaattaatgttgctgagtcatttcat 21635985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 6122017 - 6121909
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||  |||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  6122017 ctccggtcctatttataagagaaatttagatcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 6121918  T
Q  124 cttataaat 132  Q
    |||||||||    
T  6121917 cttataaat 6121909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 48336269 - 48336377
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| ||||    
T  48336269 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaatttt 48336368  T
Q  124 cttataaat 132  Q
    |||||||||    
T  48336369 cttataaat 48336377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 53337376 - 53337484
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||||| ||| |||| || |    
T  53337376 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttattgacccaaaattct 53337475  T
Q  124 cttataaat 132  Q
    |||||||||    
T  53337476 cttataaat 53337484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 33621805 - 33621910
Alignment:
Q  27 cggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttctt 126  Q
    ||||| |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || ||||    
T  33621805 cggttctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattatctt 33621904  T
Q  127 ataaat 132  Q
    ||||||    
T  33621905 ataaat 33621910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 3372127 - 3372235
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  3372127 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattat 3372226  T
Q  124 cttataaat 132  Q
    |||||||||    
T  3372227 cttataaat 3372235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 3992982 - 3993090
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  3992982 ctccggtcctatttataagagaaatttcggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 3993081  T
Q  124 cttataaat 132  Q
    |||||||||    
T  3993082 cttataaat 3993090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 47833617 - 47833725
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  47833617 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 47833716  T
Q  124 cttataaat 132  Q
    |||||||||    
T  47833717 cttataaat 47833725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 4790284 - 4790362
Alignment:
Q  54 tcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||||| ||||||||||  | || ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  4790284 tcaacaaaaatgaatgtatttggactaaatttttaactagatacatcaacttttattgacccaaaattctcttataaat 4790362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 94443 - 94334
Alignment:
Q  23 tctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttt 122  Q
    ||||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  || | ||||||||| ||||||||||||||| | ||| |||| ||     
T  94443 tctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggacagaatttttaactagatacatcaacttttgttgacccaaaattc 94344  T
Q  123 tcttataaat 132  Q
    ||||||||||    
T  94343 tcttataaat 94334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 1565853 - 1565745
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  1565853 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 1565754  T
Q  124 cttataaat 132  Q
    |||||||||    
T  1565753 cttataaat 1565745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 1738571 - 1738463
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  1738571 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 1738472  T
Q  124 cttataaat 132  Q
    |||||||||    
T  1738471 cttataaat 1738463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 7240755 - 7240863
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  7240755 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 7240854  T
Q  124 cttataaat 132  Q
    |||||||||    
T  7240855 cttataaat 7240863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 7482231 - 7482339
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  7482231 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaacttttgttgacccaaaattct 7482330  T
Q  124 cttataaat 132  Q
    |||||||||    
T  7482331 cttataaat 7482339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 31319523 - 31319415
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  31319523 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 31319424  T
Q  124 cttataaat 132  Q
    |||||||||    
T  31319423 cttataaat 31319415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 36583401 - 36583509
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  36583401 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggacttaatttttaactagatacatcaacttttgttgacccaaaattct 36583500  T
Q  124 cttataaat 132  Q
    |||||||||    
T  36583501 cttataaat 36583509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 38064037 - 38063929
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  38064037 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 38063938  T
Q  124 cttataaat 132  Q
    |||||||||    
T  38063937 cttataaat 38063929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 38441466 - 38441574
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  38441466 ctccggtcctatttataagagaaatttatgtcaacaaaagtgaatgtatttgaactgaatttttaactagatacatcaacttttgttgacccaaaattct 38441565  T
Q  124 cttataaat 132  Q
    |||||||||    
T  38441566 cttataaat 38441574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 46840866 - 46840974
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  46840866 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 46840965  T
Q  124 cttataaat 132  Q
    |||||||||    
T  46840966 cttataaat 46840974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 2629638 - 2629561
Alignment:
Q  54 tcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaa 131  Q
    ||||||||| ||||||||| || || || |||||||||  ||||||||| |||||| ||||||||| |||||||||||    
T  2629638 tcaacaaaagttaatgtatctgatctaattttttaactatatacatcaaattttattgactcaaatgtttcttataaa 2629561  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 6126859 - 6126938
Alignment:
Q  53 atcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    |||||||||||| ||||||||||  | || ||||||||| ||||||||||||||| | ||| |||| || ||||||||||    
T  6126859 atcaacaaaaatgaatgtatttggactaaatttttaactagatacatcaacttttgttgacccaaaattctcttataaat 6126938  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 3549667 - 3549588
Alignment:
Q  28 ggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaactttt 107  Q
    |||| |||||||| |||| |||| | ||||||||||||||||||| || || || ||||||||   ||||||||||||||    
T  3549667 ggttctatttataagagatattttagtcaacaaaaattaatgtatctggtctaaatttttaaccgaatacatcaactttt 3549588  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 4749875 - 4749838
Alignment:
Q  37 tatacgagacatttgaatcaacaaaaattaatgtattt 74  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4749875 tatacgagaaatttgaatcaacaaaatttaatgtattt 4749838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 37642019 - 37642068
Alignment:
Q  83 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||    
T  37642019 tttttaactagatacatcaacttttattgacccaaaattctcttataaat 37642068  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 9395356 - 9395464
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  9395356 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 9395455  T
Q  124 cttataaat 132  Q
    |||||||||    
T  9395456 cttataaat 9395464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 8587206 - 8587284
Alignment:
Q  54 tcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| || ||||||||   | || ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||    
T  8587206 tcaacaaaagttgatgtattttgactaaatttttaactagatacatcaacttttattgactcaagtttctcttataaat 8587284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 3304402 - 3304294
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| ||||    
T  3304402 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaatttt 3304303  T
Q  124 cttataaat 132  Q
    |||||||||    
T  3304302 cttataaat 3304294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 12763778 - 12763670
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    ||||||| ||||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  12763778 ctccggtcttatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattat 12763679  T
Q  124 cttataaat 132  Q
    |||||||||    
T  12763678 cttataaat 12763670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 39571327 - 39571219
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||  |||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  39571327 ctccggtcctatttataagagaaatttagatcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 39571228  T
Q  124 cttataaat 132  Q
    |||||||||    
T  39571227 cttataaat 39571219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 44498311 - 44498203
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||||| ||| |||| || |    
T  44498311 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttattgacccaaaattct 44498212  T
Q  124 cttataaat 132  Q
    |||||||||    
T  44498211 cttataaat 44498203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 54736 - 54628
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  54736 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 54637  T
Q  124 cttataaat 132  Q
    |||||||||    
T  54636 cttataaat 54628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 2890286 - 2890178
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  2890286 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 2890187  T
Q  124 cttataaat 132  Q
    |||||||||    
T  2890186 cttataaat 2890178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 6552661 - 6552769
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  6552661 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 6552760  T
Q  124 cttataaat 132  Q
    |||||||||    
T  6552761 cttataaat 6552769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 7785902 - 7785794
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  7785902 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 7785803  T
Q  124 cttataaat 132  Q
    |||||||||    
T  7785802 cttataaat 7785794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 32114599 - 32114491
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| |||||||||| |||| | ||| |||| ||||    
T  32114599 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaatttt 32114500  T
Q  124 cttataaat 132  Q
    |||||||||    
T  32114499 cttataaat 32114491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 32211487 - 32211379
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||||| ||||||||||  |  | ||||||||| |||||||||| |||| | ||| |||| || |    
T  32211487 ctccggtcctatttataagagaaatttaggtcaacaaaaatgaatgtatttggactgaatttttaactagatacatcaatttttgttgacccaaaattct 32211388  T
Q  124 cttataaat 132  Q
    |||||||||    
T  32211387 cttataaat 32211379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 33289385 - 33289277
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||  ||||||| || | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  33289385 ctccggtcctatttataagagaaatttagatcaacataagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 33289286  T
Q  124 cttataaat 132  Q
    |||||||||    
T  33289285 cttataaat 33289277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 41492990 - 41492912
Alignment:
Q  54 tcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| | ||||||||||  || | ||||||||| ||||||||||||||| | ||| ||||||| ||||||||||    
T  41492990 tcaacaaaagtgaatgtatttggacagaatttttaactagatacatcaacttttgttgacccaaatttctcttataaat 41492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 12338061 - 12337953
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||| |||||||| || | ||||   ||||||||||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  12338061 ctccggttctatttataagaaaaatttaggtcaacaaaaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 12337962  T
Q  124 cttataaat 132  Q
    |||||||||    
T  12337961 cttataaat 12337953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 13344490 - 13344598
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||| |||||||| |||| ||||   ||||||||||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||  |||| || |    
T  13344490 ctccggttctatttataagagaaatttaggtcaacaaaaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgatccaaaattct 13344589  T
Q  124 cttataaat 132  Q
    |||||||||    
T  13344590 cttataaat 13344598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 1912938 - 1912838
Alignment:
Q  32 ttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaa 131  Q
    ||||||||| || | ||||| | |||||||| || |||||| |  || || ||||||| | |||| |||||||||| | ||||||||| |||||||||||    
T  1912938 ttatttataagaaatatttggaacaacaaaagttgatgtatctagtctaattttttaaatagatatatcaactttttttgactcaaatatttcttataaa 1912839  T
Q  132 t 132  Q
    |    
T  1912838 t 1912838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 3055564 - 3055672
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  3055564 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 3055663  T
Q  124 cttataaat 132  Q
    |||||||||    
T  3055664 cttataaat 3055672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 6648643 - 6648535
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   |||||| |||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  6648643 ctccggtcctatttataagagaaatttaggtcaacataaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 6648544  T
Q  124 cttataaat 132  Q
    |||||||||    
T  6648543 cttataaat 6648535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 13197834 - 13197726
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  13197834 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 13197735  T
Q  124 cttataaat 132  Q
    |||||||||    
T  13197734 cttataaat 13197726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 15896848 - 15896956
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  15896848 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 15896947  T
Q  124 cttataaat 132  Q
    |||||||||    
T  15896948 cttataaat 15896956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 37990137 - 37990029
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  37990137 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 37990038  T
Q  124 cttataaat 132  Q
    |||||||||    
T  37990037 cttataaat 37990029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 41478763 - 41478655
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  41478763 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 41478664  T
Q  124 cttataaat 132  Q
    |||||||||    
T  41478663 cttataaat 41478655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 44397553 - 44397661
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  44397553 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 44397652  T
Q  124 cttataaat 132  Q
    |||||||||    
T  44397653 cttataaat 44397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 44398692 - 44398800
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  44398692 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 44398791  T
Q  124 cttataaat 132  Q
    |||||||||    
T  44398792 cttataaat 44398800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 3564294 - 3564229
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaa 89  Q
    ||||||| ||||||| | ||||||||||||||||||||  || ||||||||| || ||||||||||    
T  3564294 ctccggtcttatttacaagagacatttgaatcaacaaaggttgatgtatttgatccaactttttaa 3564229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 28017932 - 28017977
Alignment:
Q  29 gttttatttatacgagacatttgaatcaacaaaaattaatgtattt 74  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||    
T  28017932 gttttatttataagagatatttgaatcaataaaaattaatgtattt 28017977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 34042702 - 34042810
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  34042702 ctccggtcctatttataagagaaatttaggtcaacaaaaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 34042801  T
Q  124 cttataaat 132  Q
    |||||||||    
T  34042802 cttataaat 34042810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 44953118 - 44953079
Alignment:
Q  93 gatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  44953118 gatacatcaacttttattgactcaaatgtttcttataaat 44953079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 14984842 - 14984951
Alignment:
Q  23 tctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttt 122  Q
    ||||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| ||     
T  14984842 tctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattc 14984941  T
Q  123 tcttataaat 132  Q
    ||||||||||    
T  14984942 tcttataaat 14984951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 9981653 - 9981761
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  9981653 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 9981752  T
Q  124 cttataaat 132  Q
    |||||||||    
T  9981753 cttataaat 9981761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 23278125 - 23278021
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  23278125 ctccggtcctatttataagagaaatttaggtcaacaaaaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 23278026  T
Q  124 cttat 128  Q
    |||||    
T  23278025 cttat 23278021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 27159482 - 27159374
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  27159482 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 27159383  T
Q  124 cttataaat 132  Q
    |||||||||    
T  27159382 cttataaat 27159374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 31842919 - 31842811
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  31842919 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 31842820  T
Q  124 cttataaat 132  Q
    |||||||||    
T  31842819 cttataaat 31842811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 39402090 - 39401982
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  39402090 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 39401991  T
Q  124 cttataaat 132  Q
    |||||||||    
T  39401990 cttataaat 39401982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 44668217 - 44668109
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  44668217 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 44668118  T
Q  124 cttataaat 132  Q
    |||||||||    
T  44668117 cttataaat 44668109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 47216823 - 47216715
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  47216823 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 47216724  T
Q  124 cttataaat 132  Q
    |||||||||    
T  47216723 cttataaat 47216715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 23791 - 23899
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| ||||    
T  23791 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaatttt 23890  T
Q  124 cttataaat 132  Q
    |||||||||    
T  23891 cttataaat 23899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 7597042 - 7596982
Alignment:
Q  83 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaattgtattggagg 143  Q
    |||||||||  |||||||||||||||| ||||||||||| || ||||||| | ||||||||    
T  7597042 tttttaactaaatacatcaacttttattgactcaaatttctcctataaataggattggagg 7596982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 33052918 - 33052810
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||||| ||| |||| || |    
T  33052918 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttattgacccaaaattct 33052819  T
Q  124 cttataaat 132  Q
    |||||||||    
T  33052818 cttataaat 33052810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 6069034 - 6068959
Alignment:
Q  54 tcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttata 129  Q
    ||||||||| |||||||||||| || || ||||||||||||||| ||| ||||| | |||  |||| |||||||||    
T  6069034 tcaacaaaagttaatgtatttggtctaaatttttaactcgatacttcatcttttgttgacctaaatatttcttata 6068959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 33393211 - 33393165
Alignment:
Q  83 tttttaactcgatacatcaacttttatcgactcaaatttttcttata 129  Q
    |||| |||| ||||||||||||||||| ||||||||||| |||||||    
T  33393211 ttttaaactagatacatcaacttttattgactcaaatttctcttata 33393165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 6068631 - 6068680
Alignment:
Q  83 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| ||||||||||||||| | |||||||| || ||||||||||    
T  6068631 tttttaactagatacatcaacttttgttgactcaaaattctcttataaat 6068680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 2830341 - 2830449
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  2830341 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 2830440  T
Q  124 cttataaat 132  Q
    |||||||||    
T  2830441 cttataaat 2830449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 6330121 - 6330229
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  6330121 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 6330220  T
Q  124 cttataaat 132  Q
    |||||||||    
T  6330221 cttataaat 6330229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 8383093 - 8382985
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  8383093 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 8382994  T
Q  124 cttataaat 132  Q
    |||||||||    
T  8382993 cttataaat 8382985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 9644702 - 9644810
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   |||||| |||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  9644702 ctccggtcctatttataagagaaatttaggtcaacataaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 9644801  T
Q  124 cttataaat 132  Q
    |||||||||    
T  9644802 cttataaat 9644810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 9650719 - 9650827
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   |||||| |||| ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  9650719 ctccggtcctatttataagagaaatttaggtcaacataaatgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 9650818  T
Q  124 cttataaat 132  Q
    |||||||||    
T  9650819 cttataaat 9650827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 11572269 - 11572161
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  11572269 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 11572170  T
Q  124 cttataaat 132  Q
    |||||||||    
T  11572169 cttataaat 11572161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 26602329 - 26602437
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  26602329 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 26602428  T
Q  124 cttataaat 132  Q
    |||||||||    
T  26602429 cttataaat 26602437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 34988090 - 34988189
Alignment:
Q  33 tatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    |||||||  ||||||||||  ||||||||| || || ||| || || |  ||||||||| |||||||||||| || | ||||||||| ||||||||||||    
T  34988090 tatttattagagacatttgggtcaacaaaagttgatctatctggtccacttttttaactagatacatcaactattgttgactcaaatatttcttataaat 34988189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 25394348 - 25394394
Alignment:
Q  29 gttttatttatacgagacatttgaatcaacaaaaattaatgtatttg 75  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||    
T  25394348 gttttatttttaagagatatttggatcaacaaaaattaatgtatttg 25394394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 33943026 - 33942948
Alignment:
Q  54 tcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| ||||||||||||  |  | ||||||||| ||||||||||||||| | ||| ||| ||| ||||||||||    
T  33943026 tcaacaaaagttaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaagtttctcttataaat 33942948  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 8437490 - 8437539
Alignment:
Q  83 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| ||||||||||||||| | |||||||| || ||||||||||    
T  8437490 tttttaactagatacatcaacttttgttgactcaaaattctcttataaat 8437539  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 9583076 - 9582975
Alignment:
Q  31 tttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaatttttcttataa 130  Q
    |||||||||| || ||||||||||||  |||| || |||| |||| || || |||| |||   ||||||||| |||| ||||||||||| | ||||||||    
T  9583076 tttatttataagaaacatttgaatcactaaaatttgatgtgtttggtctaaattttgaacaacatacatcaatttttgtcgactcaaatatctcttataa 9582977  T
Q  131 at 132  Q
    ||    
T  9582976 at 9582975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 10297985 - 10298093
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  10297985 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 10298084  T
Q  124 cttataaat 132  Q
    |||||||||    
T  10298085 cttataaat 10298093  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 11508455 - 11508387
Alignment:
Q  33 tatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatca 101  Q
    ||||||||  ||| |||||| ||||||||||||||||||||| ||| || || |||||  |||||||||    
T  11508455 tatttataaaagatatttgagtcaacaaaaattaatgtatttactctaaattcttaaccagatacatca 11508387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 17653718 - 17653826
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  17653718 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 17653817  T
Q  124 cttataaat 132  Q
    |||||||||    
T  17653818 cttataaat 17653826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 19557176 - 19557068
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  19557176 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 19557077  T
Q  124 cttataaat 132  Q
    |||||||||    
T  19557076 cttataaat 19557068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 22721937 - 22722045
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  22721937 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 22722036  T
Q  124 cttataaat 132  Q
    |||||||||    
T  22722037 cttataaat 22722045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 37508927 - 37509035
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  37508927 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 37509026  T
Q  124 cttataaat 132  Q
    |||||||||    
T  37509027 cttataaat 37509035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 38964398 - 38964506
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||  |||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | |||  ||| || |    
T  38964398 ctccggtcctatttataagagaaatttagatcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgaccaaaaattct 38964497  T
Q  124 cttataaat 132  Q
    |||||||||    
T  38964498 cttataaat 38964506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 44785520 - 44785412
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  44785520 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 44785421  T
Q  124 cttataaat 132  Q
    |||||||||    
T  44785420 cttataaat 44785412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 49823505 - 49823397
Alignment:
Q  24 ctccggttttatttatacgagacatttgaatcaacaaaaattaatgtatttgctcaaactttttaactcgatacatcaacttttatcgactcaaattttt 123  Q
    |||||||  |||||||| |||| ||||   ||||||||| | ||||||||||  |  | ||||||||| ||||||||||||||| | ||| |||| || |    
T  49823505 ctccggtcctatttataagagaaatttaggtcaacaaaagtgaatgtatttggactgaatttttaactagatacatcaacttttgttgacccaaaattct 49823406  T
Q  124 cttataaat 132  Q
    |||||||||    
T  49823405 cttataaat 49823397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 6196 - 6147
Alignment:
Q  83 tttttaactcgatacatcaacttttatcgactcaaatttttcttataaat 132  Q
    ||||||||| ||||||||||||||| | ||| |||| |||||||||||||    
T  6196 tttttaactagatacatcaacttttgttgacccaaaattttcttataaat 6147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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