View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19830_high_6 (Length: 285)
Name: NF19830_high_6
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19830_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 687814 - 688047
Alignment:
| Q |
10 |
aagaaaatgagttcgagttataaccaaaatgacaatcatttgttaaaatcaaaacaaaactagtcttttcctaaaaaattaagatgggttcgtaaggcgt |
109 |
Q |
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| T |
687814 |
aagaatatgagttcgagttataaccaaaacgacaatcatttgttataatcaaaacaaaactagtcttttcctaaaatattaagatgggt----aaggcgt |
687909 |
T |
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| Q |
110 |
tcaaaaataacgtattaaactgtgcaaaaattcaatttgatgcagatcagaaaatatataagcaacaaacaagcttccatttcagtgagttaaatcaatt |
209 |
Q |
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| T |
687910 |
tcaaaa-taacatattaaactgtgcaaaaattcaatttgatgcagatcagaaaatatataagcaacaaacaagcttccatttcagtgagttaaatcaatt |
688008 |
T |
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| Q |
210 |
actagtcagaaactttatccgcagtacaaatgaatgaat |
248 |
Q |
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| T |
688009 |
actagtcagaaactttatccgcagtacaaatgaatgaat |
688047 |
T |
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