View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19830_low_10 (Length: 231)
Name: NF19830_low_10
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19830_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 6248216 - 6248042
Alignment:
| Q |
55 |
agattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaa |
154 |
Q |
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| T |
6248216 |
agattaatcaattaaaacaattggttattgatttggaacgtgatgaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaa |
6248117 |
T |
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| Q |
155 |
accagacgttgatgtatggctggaagatttactagatatgaaaaaagatgcaaatgagatgaatagcttagatga |
229 |
Q |
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| T |
6248116 |
accagaagttgatgagtggttggaagaattactaaatttgaaagaaagtgcaaatgagatgaatagctcagatga |
6248042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 6107022 - 6106868
Alignment:
| Q |
43 |
tttctgaaagccagattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttggagtctcgggg |
142 |
Q |
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| T |
6107022 |
tttctgaaagtgagattaatcaattaaaacaattggttattgatttaaaatgtgaggaaaaagatattgcaaaacaacttcaatggttggagtctcgggg |
6106923 |
T |
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| Q |
143 |
caaaaaacgcaaaccagacgttgatgtatggctggaagatttactagatatgaaa |
197 |
Q |
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| T |
6106922 |
aaaaaagcgcaaaccagaagttgatgtatggctgagaaaattactagatatgaaa |
6106868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 6181395 - 6181221
Alignment:
| Q |
55 |
agattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaa |
154 |
Q |
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| T |
6181395 |
agattaatcaattaaaacaattggttattgatttggaatgtgataaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaa |
6181296 |
T |
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| Q |
155 |
accagacgttgatgtatggctggaagatttactagatatgaaaaaagatgcaaatgagatgaatagcttagatga |
229 |
Q |
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| T |
6181295 |
atcagaagttgataagtggttggaagaattaccaaatatgagagaaagtgcaaataagatgaatagctcagatga |
6181221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 6208963 - 6208821
Alignment:
| Q |
55 |
agattaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaa |
154 |
Q |
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| T |
6208963 |
agattgatcaaataaaacaaatggttcttgatttagaatgcgaggaaaatgttattgcaaagcaacagcaatcgttggaatctcggggcaaaaagcgcaa |
6208864 |
T |
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| Q |
155 |
accagacgttgatgtatggctggaagatttactagatatgaaa |
197 |
Q |
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| T |
6208863 |
acgagaagttgatgtatggctgagaaaattacaagatatgaaa |
6208821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 6095188 - 6095098
Alignment:
| Q |
88 |
tagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaaaccagacgttgatgtatggctgga |
178 |
Q |
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| T |
6095188 |
tagaatgtgaggaacatgatgttacagaacaactgcaactgttggagtctaggggcataaaacgcaaaccaaaagttgatgaatggctgga |
6095098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 6089836 - 6089704
Alignment:
| Q |
58 |
ttaatcaattaaaactattggttattgatttagaatgtgaggaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaaacc |
157 |
Q |
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| T |
6089836 |
ttaatcacttaaaacaattggtttttgatctagaatgtgaggaaaattatattacaaaacaacttcaacgattaaagtctcatggaaaaaagcgcaagca |
6089737 |
T |
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| Q |
158 |
agacgttgatgtatggctggaagatttactaga |
190 |
Q |
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| T |
6089736 |
agaagttgatatatggctagaagagttactaga |
6089704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 6238146 - 6238077
Alignment:
| Q |
99 |
gaaaacgatattgcaaaacaactgcaatcgttggagtctcggggcaaaaaacgcaaaccagacgttgatg |
168 |
Q |
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| T |
6238146 |
gaaaatgatattgcaaagcaacaacaatcgttggaatctcggggcaaaaagcgcaagcgagaagttgatg |
6238077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 6213674 - 6213638
Alignment:
| Q |
132 |
gagtctcggggcaaaaaacgcaaaccagacgttgatg |
168 |
Q |
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| T |
6213674 |
gagtctcggggcaaaaaacgcaaaccagaagttgatg |
6213638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 6213732 - 6213676
Alignment:
| Q |
41 |
tgtttctgaaagccagattaatcaattaaaactattggttattgatttagaatgtga |
97 |
Q |
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| T |
6213732 |
tgtttatgaaagtgagaataatcaattaaaccaattggttattgatttagaatgtga |
6213676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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