View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19830_low_2 (Length: 711)

Name: NF19830_low_2
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19830_low_2
NF19830_low_2
[»] chr6 (13 HSPs)
chr6 (224-693)||(33924641-33925111)
chr6 (19-126)||(33924435-33924542)
chr6 (625-687)||(33419162-33419224)
chr6 (591-669)||(12696331-12696406)
chr6 (634-669)||(17435206-17435241)
chr6 (594-682)||(31384914-31385004)
chr6 (621-683)||(7996382-7996444)
chr6 (621-683)||(8022357-8022419)
chr6 (623-669)||(12627583-12627629)
chr6 (621-683)||(13364709-13364771)
chr6 (625-679)||(24614407-24614461)
chr6 (616-669)||(9025493-9025546)
chr6 (130-163)||(33924585-33924618)
[»] chr3 (9 HSPs)
chr3 (623-677)||(29508443-29508497)
chr3 (621-683)||(38731211-38731273)
chr3 (616-669)||(8039834-8039887)
chr3 (621-669)||(7928457-7928505)
chr3 (619-668)||(9789126-9789175)
chr3 (591-669)||(10690234-10690314)
chr3 (634-679)||(14216889-14216934)
chr3 (634-679)||(14223018-14223063)
chr3 (621-670)||(17005623-17005672)
[»] chr7 (7 HSPs)
chr7 (616-668)||(10478722-10478775)
chr7 (624-673)||(18013081-18013130)
chr7 (610-685)||(7328684-7328759)
chr7 (589-670)||(7758328-7758406)
chr7 (620-668)||(27732242-27732290)
chr7 (624-678)||(17851429-17851483)
chr7 (621-687)||(21826262-21826328)
[»] chr1 (7 HSPs)
chr1 (621-673)||(39130771-39130823)
chr1 (594-669)||(1486689-1486761)
chr1 (621-668)||(52903257-52903304)
chr1 (623-669)||(8010293-8010339)
chr1 (616-662)||(34315726-34315772)
chr1 (616-669)||(48148036-48148090)
chr1 (624-669)||(17754318-17754363)
[»] chr4 (4 HSPs)
chr4 (623-661)||(1213227-1213265)
chr4 (616-679)||(30838207-30838270)
chr4 (616-669)||(31800477-31800530)
chr4 (621-670)||(54580027-54580076)
[»] chr5 (3 HSPs)
chr5 (634-683)||(43001793-43001842)
chr5 (623-669)||(34879357-34879403)
chr5 (616-669)||(36838550-36838603)
[»] chr2 (5 HSPs)
chr2 (616-668)||(30527594-30527646)
chr2 (621-669)||(34691809-34691857)
chr2 (621-669)||(34714221-34714269)
chr2 (616-670)||(12668422-12668476)
chr2 (594-650)||(35056894-35056953)
[»] chr8 (6 HSPs)
chr8 (626-668)||(29519203-29519245)
chr8 (619-668)||(7207665-7207714)
chr8 (619-668)||(7207900-7207949)
chr8 (621-670)||(7658469-7658518)
chr8 (22-131)||(11063342-11063451)
chr8 (621-666)||(22493504-22493549)
[»] scaffold1528 (1 HSPs)
scaffold1528 (624-669)||(1042-1087)
[»] scaffold0123 (1 HSPs)
scaffold0123 (616-669)||(44524-44577)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 224 - 693
Target Start/End: Original strand, 33924641 - 33925111
Alignment:
Q  224 ataccaatgtatcagaaaactattaacatgtgacaattagtatttgttgattgtgaaattcatgaaataaacannnnnnnnaactttcgtttcttagagg 323  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||        ||||||| |||||||||||    
T  33924641 ataccaatgtatcagaaaactattaacatgttagaattagtatttgttgattgtgaaattcatcaaataaacattttttt-aactttcttttcttagagg 33924739  T
Q  324 gctactgttaagaaatgttaattttatataggtacagtcaggttgtgatttgaaatgaaatgcaaccaaatcatatgatattagggaccacctgataata 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33924740 gctactgttaagaaatgttaattttatataggtacagtcaggttgtgatttgaaatgaaatgcaaccaaatcatatgatattagggaccacctgataata 33924839  T
Q  424 tttcaaatcatcaatattttagtacatcaatcaagcataaatgcatacannnnnnncaatttgatagtgacacatatcttctttgccgagggaaccttaa 523  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  33924840 tttcaaatcatcaatattttagtacatcaatcaagtataaatgcataca-ttttttcaatttgatagtgacacatatcttctttgccgagggaaccttaa 33924938  T
Q  524 catcttgtaaaatgatacatcaaatctatgaattaggaacacccataagattaaac-----------gtgtcgctatatcagacacgtgtcgtgtcccac 612  Q
    ||||||||||||||||||||         ||||||||||||||||||||||| | |           ||||| ||||||||||||||||| |||||||||    
T  33924939 catcttgtaaaatgatacat--------agaattaggaacacccataagatttagcgtgtccctatagtgtccctatatcagacacgtgttgtgtcccac 33925030  T
Q  613 gaaacgataccgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgttagtttcaat 693  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  33925031 gacacgataccgacacatattattacactgaattatataattttttaaaattgttagtagtatcgatatgttagtgtcaat 33925111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 33924435 - 33924542
Alignment:
Q  19 tgacagaatcacagtaatccgctgtgattttacagaagctacaaagtgtatcctttaaaaaattaaggtgagttgtcgtgattctgacacactcaccaca 118  Q
    ||||||||||||| ||||||| |||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||||| || || ||||||||||    
T  33924435 tgacagaatcacaataatccgttgtgattttacagaaattacaaagtgtaacctttgaaaaatcaaggtgagttgtcgtgattatgtcatactcaccaca 33924534  T
Q  119 ataccaaa 126  Q
    ||| ||||    
T  33924535 atagcaaa 33924542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 625 - 687
Target Start/End: Complemental strand, 33419224 - 33419162
Alignment:
Q  625 acacatattattacactgaattatataattttttaaaattattagtagtatcgacatgttagt 687  Q
    |||||||| |||||| |||||||||| | ||||| ||||||||||| || |||||||||||||    
T  33419224 acacatataattacattgaattatatcaatttttcaaattattagtggtttcgacatgttagt 33419162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 669
Target Start/End: Complemental strand, 12696406 - 12696331
Alignment:
Q  591 tcagacacgtgtcgtgtcccacgaaacgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    ||||||||||||||||||| ||   |||| || ||||| | | ||||||||||||||| ||||||||| ||||||||||    
T  12696406 tcagacacgtgtcgtgtccgac---acgacactgacacttgtaattacactgaattatgtaattttttcaaattattag 12696331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 669
Target Start/End: Complemental strand, 17435241 - 17435206
Alignment:
Q  634 attacactgaattatataattttttaaaattattag 669  Q
    ||||||||||||||| ||||||||||||||||||||    
T  17435241 attacactgaattatgtaattttttaaaattattag 17435206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 682
Target Start/End: Complemental strand, 31385004 - 31384914
Alignment:
Q  594 gacacgtgtcgtgtcc--cacgaaacgataccgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatg 682  Q
    ||||||||||||||||  ||| | |||| || ||||| | | ||||||||||||||| | ||||||| ||||||||||| ||||| |||||    
T  31385004 gacacgtgtcgtgtccaacactacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagttgtatcaacatg 31384914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 7996382 - 7996444
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgt 683  Q
    |||||| ||||| ||||||||||||||||| ||||| | |||||||||| ||| ||| |||||    
T  7996382 accgacgcatataattacactgaattatatgattttctcaaattattagcagtgtcggcatgt 7996444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 8022419 - 8022357
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgt 683  Q
    |||||| ||||| ||||||||||||||||| ||||| | |||||||||| ||| ||| |||||    
T  8022419 accgacgcatataattacactgaattatatgattttctcaaattattagcagtgtcggcatgt 8022357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 669
Target Start/End: Original strand, 12627583 - 12627629
Alignment:
Q  623 cgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||||||||||||||||| | ||||||| | ||||||||    
T  12627583 cgacacatattattacactgaattatgtgattttttcacattattag 12627629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 13364709 - 13364771
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgt 683  Q
    |||||||||||| ||||||||||||||||| ||||| | ||||||| || ||| ||| |||||    
T  13364709 accgacacatatgattacactgaattatatgattttctcaaattataagcagtgtcggcatgt 13364771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 679
Target Start/End: Complemental strand, 24614461 - 24614407
Alignment:
Q  625 acacatattattacactgaattatataattttttaaaattattagtagtatcgac 679  Q
    |||||||  |||||||| |||||||||||||||| ||||||||||  ||||||||    
T  24614461 acacatacaattacactaaattatataatttttttaaattattagcggtatcgac 24614407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 9025493 - 9025546
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||| |||||||||||| ||||||||||||||| | ||||| | ||||||||||    
T  9025493 acgacaccgacacatataattacactgaattatgtgattttctcaaattattag 9025546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 33924585 - 33924618
Alignment:
Q  130 atagaggtgaagaatttgagagcttttctcattt 163  Q
    |||||||||||||||||||||||| |||||||||    
T  33924585 atagaggtgaagaatttgagagctgttctcattt 33924618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 623 - 677
Target Start/End: Complemental strand, 29508497 - 29508443
Alignment:
Q  623 cgacacatattattacactgaattatataattttttaaaattattagtagtatcg 677  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  29508497 cgacacatataattacactgaattatatgattttttcaaattattagtggtatcg 29508443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 38731273 - 38731211
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgt 683  Q
    |||||||||||| | ||||||||||||| | ||||||||||||||||||  ||||||||||||    
T  38731273 accgacacatataactacactgaattatgtgattttttaaaattattagcggtatcgacatgt 38731211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 8039834 - 8039887
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||| |||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  8039834 acgacaccgacacatataattacactgaattatataattttctcaaattattag 8039887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 669
Target Start/End: Complemental strand, 7928505 - 7928457
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||||||||    
T  7928505 accgacacatataattacactgaattatgtgattttttcaaattattag 7928457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 668
Target Start/End: Complemental strand, 9789175 - 9789126
Alignment:
Q  619 ataccgacacatattattacactgaattatataattttttaaaattatta 668  Q
    |||||||||||||| |||||| | |||||||| ||||| |||||||||||    
T  9789175 ataccgacacatataattacattaaattatattattttataaaattatta 9789126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 669
Target Start/End: Original strand, 10690234 - 10690314
Alignment:
Q  591 tcagacacgtgtcgtgtcc--cacgaaacgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||| ||||||  ||| |||| ||||||||| |||| ||||||||||||||| | ||||| | | ||||||||    
T  10690234 tcagacacgtgttgtgtccgacactaaacaataccgacaaatataattacactgaattatgtgattttctcagattattag 10690314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 679
Target Start/End: Complemental strand, 14216934 - 14216889
Alignment:
Q  634 attacactgaattatataattttttaaaattattagtagtatcgac 679  Q
    ||||||||||||||||| || |||||||||||||||| || |||||    
T  14216934 attacactgaattatatgatattttaaaattattagttgtgtcgac 14216889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 679
Target Start/End: Complemental strand, 14223063 - 14223018
Alignment:
Q  634 attacactgaattatataattttttaaaattattagtagtatcgac 679  Q
    ||||||||||||||||| || |||||||||||||||| || |||||    
T  14223063 attacactgaattatatgatattttaaaattattagttgtgtcgac 14223018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 670
Target Start/End: Original strand, 17005623 - 17005672
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagt 670  Q
    |||||||| ||| ||||||||||||||||| ||||| | |||||||||||    
T  17005623 accgacacttataattacactgaattatatgattttatcaaattattagt 17005672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 10478722 - 10478775
Alignment:
Q  616 acgataccgacacatattattacactgaattatataa-ttttttaaaattatta 668  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  10478722 acgatatcgacacatataattacactgaattatataatttttttaaaattatta 10478775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 624 - 673
Target Start/End: Original strand, 18013081 - 18013130
Alignment:
Q  624 gacacatattattacactgaattatataattttttaaaattattagtagt 673  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  18013081 gacacatataattacactgaattatgtaatttttttaaattattagtagt 18013130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 610 - 685
Target Start/End: Original strand, 7328684 - 7328759
Alignment:
Q  610 cacgaaacgataccgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgtta 685  Q
    ||||| |||| |||||||||||| |||||||| |||||| | ||||| | |||||||||| ||||||||| |||||    
T  7328684 cacgacacgacaccgacacatataattacactaaattatgttattttctcaaattattagcagtatcgacgtgtta 7328759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 589 - 670
Target Start/End: Complemental strand, 7758406 - 7758328
Alignment:
Q  589 tatcagacacgtgtcgtgtcccacgaaacgataccgacacatattattacactgaattatataattttttaaaattattagt 670  Q
    |||||||||| ||| |||||| ||   |||| ||||||||| || |||| |||||||||||||||||| |||||||||||||    
T  7758406 tatcagacacatgtggtgtccgac---acgacaccgacacacataattatactgaattatataattttctaaaattattagt 7758328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 668
Target Start/End: Original strand, 27732242 - 27732290
Alignment:
Q  620 taccgacacatattattacactgaattatataattttttaaaattatta 668  Q
    ||||||||||||| ||||||||||||||| ||||||| | |||||||||    
T  27732242 taccgacacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 17851483 - 17851429
Alignment:
Q  624 gacacatattattacactgaattatataattttttaaaattattagtagtatcga 678  Q
    ||||||||| ||||||||||||||| | ||||| ||||||||||||  |||||||    
T  17851483 gacacatataattacactgaattatgtgattttctaaaattattagcggtatcga 17851429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 621 - 687
Target Start/End: Complemental strand, 21826328 - 21826262
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagtagtatcgacatgttagt 687  Q
    ||||||||||||||||| ||||| |||| | ||||||| ||||||||||| || ||| | |||||||    
T  21826328 accgacacatattattagactgagttatgtgatttttttaaattattagtcgtgtcggcgtgttagt 21826262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 673
Target Start/End: Original strand, 39130771 - 39130823
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagtagt 673  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||    
T  39130771 accgacacatataattacactaaattatataattttctaaaattattaatagt 39130823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 669
Target Start/End: Original strand, 1486689 - 1486761
Alignment:
Q  594 gacacgtgtcgtgtcccacgaaacgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||||||| ||   |||| |||||||| ||| ||||||||||||||| | ||||||| ||||||||||    
T  1486689 gacacgtgtcgtgtccgac---acgacaccgacacttataattacactgaattatgtgattttttcaaattattag 1486761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 668
Target Start/End: Complemental strand, 52903304 - 52903257
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattatta 668  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||||||    
T  52903304 accgacacatataattacactgaattatatgattttattaaattatta 52903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 669
Target Start/End: Original strand, 8010293 - 8010339
Alignment:
Q  623 cgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||| ||| |||| |||||||||||||||||||| ||||||||||    
T  8010293 cgacacttataattatactgaattatataattttttcaaattattag 8010339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 662
Target Start/End: Complemental strand, 34315772 - 34315726
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaa 662  Q
    ||||||||||||||||| ||||||| ||||||| || ||||||||||    
T  34315772 acgataccgacacatataattacaccgaattatgtagttttttaaaa 34315726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 48148036 - 48148090
Alignment:
Q  616 acgataccgacacatattattacactgaattatat-aattttttaaaattattag 669  Q
    |||| ||||||| |||| ||||||||||||||||| | |||||||||||||||||    
T  48148036 acgacaccgacatatataattacactgaattatatgatttttttaaaattattag 48148090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 669
Target Start/End: Complemental strand, 17754363 - 17754318
Alignment:
Q  624 gacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||  |||||||||||||| ||||||||| ||||||||||    
T  17754363 gacacatatagttacactgaattatgtaattttttcaaattattag 17754318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 661
Target Start/End: Original strand, 1213227 - 1213265
Alignment:
Q  623 cgacacatattattacactgaattatataattttttaaa 661  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  1213227 cgacacatataattacactgaattatataattttttaaa 1213265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 679
Target Start/End: Complemental strand, 30838270 - 30838207
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattagtagtatcgac 679  Q
    |||| ||||| || ||| |||||||| |||||||||||||| | |||||||||| |||||||||    
T  30838270 acgacaccgatacttataattacactaaattatataattttatcaaattattagcagtatcgac 30838207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 31800477 - 31800530
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    ||||||||||||| | | |||||| | |||||| ||||||||||||||||||||    
T  31800477 acgataccgacacttgtaattacattaaattatttaattttttaaaattattag 31800530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 670
Target Start/End: Original strand, 54580027 - 54580076
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagt 670  Q
    |||||||| ||| ||||||||||||||| | ||||||| |||||||||||    
T  54580027 accgacacttataattacactgaattatgtgattttttcaaattattagt 54580076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 634 - 683
Target Start/End: Complemental strand, 43001842 - 43001793
Alignment:
Q  634 attacactgaattatataattttttaaaattattagtagtatcgacatgt 683  Q
    ||||||||||||||| ||||||||| |||||||||| ||| |||||||||    
T  43001842 attacactgaattatgtaattttttcaaattattagcagtgtcgacatgt 43001793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 623 - 669
Target Start/End: Complemental strand, 34879403 - 34879357
Alignment:
Q  623 cgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||||||||||||||||||| ||||| | ||||| ||||    
T  34879403 cgacacatattattacactgaattatatgattttctcaaatttttag 34879357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 36838603 - 36838550
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||| |||||||||||| |||||||| |||||| ||||||| | ||||||||||    
T  36838603 acgacaccgacacatataattacactaaattatgtaattttctcaaattattag 36838550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 30527594 - 30527646
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattatta 668  Q
    ||||||||||||||||| |||||||| |||||||| ||||| | |||||||||    
T  30527594 acgataccgacacatataattacactaaattatatgattttctcaaattatta 30527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 669
Target Start/End: Original strand, 34691809 - 34691857
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||| ||||||||||||||||| ||||| | ||||||||||    
T  34691809 accgacacatataattacactgaattatatgattttatcaaattattag 34691857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 669
Target Start/End: Original strand, 34714221 - 34714269
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||||| ||||||||||||||||| ||||| | ||||||||||    
T  34714221 accgacacatataattacactgaattatatgattttatcaaattattag 34714269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 670
Target Start/End: Original strand, 12668422 - 12668476
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattagt 670  Q
    |||| |||||||| ||| ||||||||||||||| | ||||||| |||||||||||    
T  12668422 acgacaccgacacttataattacactgaattatgtcattttttcaaattattagt 12668476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 35056953 - 35056894
Alignment:
Q  594 gacacgtgtcgtgtcccac---gaaacgataccgacacatattattacactgaattatat 650  Q
    |||||||||||||||| ||   || |||| |||||||||||| |||||||||||||||||    
T  35056953 gacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatat 35056894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 668
Target Start/End: Complemental strand, 29519245 - 29519203
Alignment:
Q  626 cacatattattacactgaattatataattttttaaaattatta 668  Q
    ||||| |||||||| |||||||||| |||||||||||||||||    
T  29519245 cacatgttattacattgaattatatgattttttaaaattatta 29519203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 668
Target Start/End: Complemental strand, 7207714 - 7207665
Alignment:
Q  619 ataccgacacatattattacactgaattatataattttttaaaattatta 668  Q
    |||||||||||||| |||| | | ||||||||||||||| ||||||||||    
T  7207714 ataccgacacatataattatatttaattatataatttttaaaaattatta 7207665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 668
Target Start/End: Complemental strand, 7207949 - 7207900
Alignment:
Q  619 ataccgacacatattattacactgaattatataattttttaaaattatta 668  Q
    |||||||||||||| |||| | | ||||||||||||||| ||||||||||    
T  7207949 ataccgacacatataattatatttaattatataatttttaaaaattatta 7207900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 670
Target Start/End: Complemental strand, 7658518 - 7658469
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattattagt 670  Q
    ||||||| |||| ||||||||||||||| ||||||| | |||||||||||    
T  7658518 accgacaaatataattacactgaattatgtaattttctcaaattattagt 7658469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 11063451 - 11063342
Alignment:
Q  22 cagaatcacagtaatccgctgtgattttacagaagctacaaagtgtatcctttaaaaaattaaggtgagttgtcgtgattctgacacactcaccacaata 121  Q
    ||||||||| |||||||    |||||||| |||| ||| |||||||| | |||||||||||| ||||  | ||||||||||| | | ||||||||  |||    
T  11063451 cagaatcacggtaatccatcatgattttatagaaactataaagtgtaacttttaaaaaattatggtggatcgtcgtgattcttatatactcaccatgata 11063352  T
Q  122 ccaaaaatat 131  Q
    ||||| ||||    
T  11063351 ccaaacatat 11063342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 666
Target Start/End: Complemental strand, 22493549 - 22493504
Alignment:
Q  621 accgacacatattattacactgaattatataattttttaaaattat 666  Q
    ||||||| |||| ||||||||||||||| | |||||||||||||||    
T  22493549 accgacatatatgattacactgaattatgtgattttttaaaattat 22493504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 669
Target Start/End: Complemental strand, 1087 - 1042
Alignment:
Q  624 gacacatattattacactgaattatataattttttaaaattattag 669  Q
    |||||||||  |||||||||||||| ||||||||| ||||||||||    
T  1087 gacacatatagttacactgaattatgtaattttttcaaattattag 1042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 669
Target Start/End: Original strand, 44524 - 44577
Alignment:
Q  616 acgataccgacacatattattacactgaattatataattttttaaaattattag 669  Q
    ||||||||||||||||| ||||||||||||||| | ||||| | ||||| ||||    
T  44524 acgataccgacacatataattacactgaattatgtgattttctcaaatttttag 44577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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