View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19830_low_3 (Length: 588)
Name: NF19830_low_3
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19830_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 47752470 - 47753038
Alignment:
| Q |
1 |
cctcatcaagctaatagagaccattcccttgaccttctttcagaatctttcagacaacaaacatcacatccatattatgcagcacttggtttccatggcc |
100 |
Q |
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| T |
47752470 |
cctcatcaagctaatagagaccattcccttgaccttctttcagaatctttcagacaacaaacatcacatccatattatgcagcacttggtttccatggcc |
47752569 |
T |
|
| Q |
101 |
tatttcaagcaccattagaggtagaatcaaaggaaaacataaaccatgttgatgtttctacttcccaaatgcctcaaaactggtatcctgcttctcaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47752570 |
tatttcaagcaccattagaggtagaatcaaaggaaaacattaaccatgttgatgtttctacttcccaaatgcctcaaaactggtatcctgcttctcaggc |
47752669 |
T |
|
| Q |
201 |
tttagagcagcaaatggggaatcacaatggtggagttggtgttggtggttcttctactgttgttggttctgtagaaagtggtgagttacaatctttaagc |
300 |
Q |
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| T |
47752670 |
tttagagcagcaaatggggaatcacaatggtggagttggtgttggtggttcttctactgttgttggttctgtagaaagtggtgagttacaatctttaagc |
47752769 |
T |
|
| Q |
301 |
ctttcaatgagccctggttctcaatctagctgtgttactgttcctagacagatctcacctactggaacagaatcagtgactatggaggctnnnnnnngag |
400 |
Q |
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| T |
47752770 |
ctttcaatgagccctggttctcaatctagctgtgttactgttcctagacagatctcacctactggaacagaatcagtgactatggaggctaaaaaaagag |
47752869 |
T |
|
| Q |
401 |
gagctgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatctcagtatagaggtgtcacaaggtaaatttg |
500 |
Q |
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| T |
47752870 |
gagctgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatctcagtatagaggtgtcacaaggtaaatttg |
47752969 |
T |
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| Q |
501 |
tgttgatcataannnnnnnnatctcatagtgtgttcttcattgtttgattacatttaattatacttgtct |
570 |
Q |
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| T |
47752970 |
tgttgatcataa-tttttttatctcatagtgtgttcttcattgtttgattacatttaattatacttgtct |
47753038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 40189316 - 40189379
Alignment:
| Q |
431 |
ttcataggaaatctattgacacttttggacagagaacatctcagtatagaggtgtcacaaggta |
494 |
Q |
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| T |
40189316 |
ttcataggaaatctattgatacttttggtcaaagaacctctcaatatagaggtgtaacaaggta |
40189379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 278 - 493
Target Start/End: Complemental strand, 4847709 - 4847494
Alignment:
| Q |
278 |
gtggtgagttacaatctttaagcctttcaatgagccctggttctcaatctagctgtgttactgttcctagacagatctcacctactggaacagaatcagt |
377 |
Q |
| |
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|||| |||||||| || |||||||||| ||||| |||||||||||||| || |||||||||||||| | ||||| ||| || ||||||| || ||||| |
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| T |
4847709 |
gtggagagttacagactctaagcctttctatgagtcctggttctcaatcaagttgtgttactgttccaaatcagatttcagcttctggaactgattcagt |
4847610 |
T |
|
| Q |
378 |
gactatggaggctnnnnnnngaggagctgctaagcttggtcaaaagcagcctattcataggaaatctattgacacttttggacagagaacatctcagtat |
477 |
Q |
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| | || ||| ||||| ||||||| |||| || ||||| ||| |||||||||| ||||| ||| ||||| || ||||| ||||||||| |
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| T |
4847609 |
agttgttgaagctaaaaagagaggacatgctaaggttggacagaagcaacctgctcataggaaaactattagcacatttggtcaaagaacttctcagtat |
4847510 |
T |
|
| Q |
478 |
agaggtgtcacaaggt |
493 |
Q |
| |
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||||| || ||||||| |
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| T |
4847509 |
agaggagtgacaaggt |
4847494 |
T |
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