View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19830_low_5 (Length: 350)

Name: NF19830_low_5
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19830_low_5
NF19830_low_5
[»] chr1 (1 HSPs)
chr1 (26-319)||(45768416-45768709)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 26 - 319
Target Start/End: Original strand, 45768416 - 45768709
Alignment:
Q  26 acactcacttcttgtaggtgtaaagggggtatttcttcttacaccacttccatttcttgaagaaacagaaaatgtttgtggactattatcagcagtgcgc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45768416 acactcacttcttgtaggtgtaaagggggtatttcttcttacaccacttccatttcttgaagaagcagaaaatgtttgtggactattatcagcagtgcgc 45768515  T
Q  126 gatgctgctacttcttcttttgctttgtgaaacttcaatgagagactttgattttgagcttttgttgaatgttttgatggagactcatttgacatagaat 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45768516 gatgctgctacttcttcttttgctttgtgaaacttcactgagagactttgattttgagcttttgttgaatgttttgatggagattcatttgacatagaat 45768615  T
Q  226 tcacattattctcatttttattcaactgtggcttccaagtatctacttcgagaatcttatcacttttatgttcatcagggtgtatattcttcga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45768616 tcacattattctcatttttattcaactgtggcttccaagtatctacttcgagaatcttatcacttttatgttcatcagggtgtctattcttcga 45768709  T

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