View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19830_low_9 (Length: 279)
Name: NF19830_low_9
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19830_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 6181225 - 6180965
Alignment:
| Q |
1 |
gatgatattcatgagataaataagttgatcatcaatatgaaacagcacaagaaaaagaagcctctcactttgtcgactgaatttgtcggggggagattag |
100 |
Q |
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| T |
6181225 |
gatgacattcataagataaataagttgatcatcaatatgaaagattacaagaaaaagaagcctttcactttgtcaactgaatttgtcggggggagattag |
6181126 |
T |
|
| Q |
101 |
ataaaaatatccgtaaagtgttgaaacgacttgaggatgatacagtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgac |
200 |
Q |
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||||||||||| || |||||||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
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| T |
6181125 |
ataaaaatatctgtgaagtgttgaaacaacttgacgatgataaagtctttgtcattggcatatatggaatgggaggagtaggaaaaactttacttgcaac |
6181026 |
T |
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| Q |
201 |
tctcgtggagaacgaagtgaaaaggaaagcaacttttaaacatgtgttttgggtcattgtt |
261 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||| |
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| T |
6181025 |
tctcgtggagaatgaagtaaaaaggaaagcaacttttaaggatgtgttttgggtcactgtt |
6180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 6248046 - 6247786
Alignment:
| Q |
1 |
gatgatattcatgagataaataagttgatcatcaatatgaaacagcacaagaaaaagaagcctctcactttgtcgactgaatttgtcggggggagattag |
100 |
Q |
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||||| ||||||||||||||| | || ||| ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
6248046 |
gatgacattcatgagataaatcatttcatcgacaatatgaaacgacacaagaaaaagaagcctttcactttgtcaactgaatttgtcggggggagattag |
6247947 |
T |
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| Q |
101 |
ataaaaatatccgtaaagtgttgaaacgacttgaggatgatacagtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgac |
200 |
Q |
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| T |
6247946 |
atgaaaaaatccataaagtgttgaaacaacttgacgatgataaagtctttgtcattggcatatatggaatgggaggagtaggaaaaactttacatgcaac |
6247847 |
T |
|
| Q |
201 |
tctcgtggagaacgaagtgaaaaggaaagcaacttttaaacatgtgttttgggtcattgtt |
261 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||| |
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| T |
6247846 |
tctcgtggagaatgaagtaaaaaggaaagcaacttttaagcatgtgttttgggtcactgtt |
6247786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 53 - 261
Target Start/End: Complemental strand, 6213607 - 6213399
Alignment:
| Q |
53 |
aaaagaagcctctcactttgtcgactgaatttgtcggggggagattagataaaaatatccgtaaagtgttgaaacgacttgaggatgatacagtctttgt |
152 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| || |||| || ||||||||| | |||||||||||| |||| ||||||| ||||||||| |
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| T |
6213607 |
aaaataagcctctcactttgccgactgaatttgtcgggtcgaaattaaatgaaaatatccatgaagtgttgaaactccttgctgatgataaagtctttgt |
6213508 |
T |
|
| Q |
153 |
cattggcatctatggaatgggaggagtaggaaaaactttactggcgactctcgtggagaacgaagtgaaaaggaaagcaacttttaaacatgtgttttgg |
252 |
Q |
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| T |
6213507 |
cattggcatatatggaatgggaggagtgggaaaaactttacttgcaactctcgtggaaaatgaagtaaaaaggaaagcaacttttaagcatgtgttttgg |
6213408 |
T |
|
| Q |
253 |
gtcattgtt |
261 |
Q |
| |
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|||| |||| |
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| T |
6213407 |
gtcactgtt |
6213399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 6237975 - 6237847
Alignment:
| Q |
133 |
gaggatgatacagtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgactctcgtggagaacgaagtgaaaaggaaagcaa |
232 |
Q |
| |
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|||||| ||| ||| ||||| |||||||| | ||||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||||||| |
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| T |
6237975 |
gaggataataaagtgtttgttattggcatatgtggaatgggaggagtcggaaaaactttacttgcaactctcgtggagaatgaagtaaaaaggaaagcaa |
6237876 |
T |
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| Q |
233 |
cttttaaacatgtgttttgggtcattgtt |
261 |
Q |
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||||||| ||||||||||||||| |||| |
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| T |
6237875 |
cttttaaggatgtgttttgggtcactgtt |
6237847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 6208676 - 6208548
Alignment:
| Q |
133 |
gaggatgatacagtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgactctcgtggagaacgaagtgaaaaggaaagcaa |
232 |
Q |
| |
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|||||||||| ||| ||||| ||||||| | ||||||||||||||| |||||||||||||| || ||||| |||||||| ||||| ||||||||||||| |
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| T |
6208676 |
gaggatgataaagtgtttgttgttggcatatgtggaatgggaggagtcggaaaaactttacttgcaactcttgtggagaatgaagtaaaaaggaaagcaa |
6208577 |
T |
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| Q |
233 |
cttttaaacatgtgttttgggtcattgtt |
261 |
Q |
| |
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|||||| ||||||||||||||| |||| |
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| T |
6208576 |
gttttaaggatgtgttttgggtcactgtt |
6208548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 6095043 - 6094819
Alignment:
| Q |
12 |
tgagataaataagttgatcatcaatatgaaacagcacaagaaaaagaagcctctcactttgtcgactgaatttgtcggggggagattagataaaaatatc |
111 |
Q |
| |
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|||| ||||||| ||||||| ||||||||| ||||||||| | |||||||||| |||||||||||||||||| || | | |||| | | ||||||| |
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| T |
6095043 |
tgaggtaaataaattgatcaaagatatgaaacgacacaagaaagaaaagcctctcattttgtcgactgaatttgttggagaaacattatacataaatatc |
6094944 |
T |
|
| Q |
112 |
cgtaaagtgttgaaacgacttgaggatgatacagtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgactctcgtggaga |
211 |
Q |
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||||||||| || || ||||| || || ||||| ||||| ||| |||||||||||||||| |||||||||||||| || ||||| ||||||| |
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| T |
6094943 |
gaccaagtgttgagacttctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggaga |
6094844 |
T |
|
| Q |
212 |
acgaagtgaaaaggaaagcaacttt |
236 |
Q |
| |
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| T |
6094843 |
atgaagtaaaaaggaaaggaacttt |
6094819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 6106697 - 6106580
Alignment:
| Q |
144 |
agtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgactctcgtggagaacgaagtgaaaaggaaagcaacttttaaacat |
243 |
Q |
| |
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||||||||| |||||||| | |||||||||||| || |||||||||||||| || |||||||||||||| |||| ||||||||| |||||||||| || |
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| T |
6106697 |
agtctttgtaattggcatatgtggaatgggaggtgtgggaaaaactttacttgcaactctcgtggagaaggaaggaaaaaggaaaccaacttttaaggat |
6106598 |
T |
|
| Q |
244 |
gtgttttgggtcattgtt |
261 |
Q |
| |
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||| ||||| ||| |||| |
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| T |
6106597 |
gtgatttggatcactgtt |
6106580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 254
Target Start/End: Complemental strand, 6089635 - 6089416
Alignment:
| Q |
35 |
atatgaaacagcacaagaaaaagaagcctctcactttgtcgactgaatttgtcggggggagattagataaaaatatccgtaaagtgttgaaacgacttga |
134 |
Q |
| |
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||||||||| |||||| || | || ||||||||||||||||| |||||||| ||| |||||| |||||| | |||||| | |||| || || |
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| T |
6089635 |
atatgaaacgacacaaggaagaaaaacctctcactttgtcgacagaatttgttgggaaagcattagactttaatatcaggaaagtgcttaaacttctaga |
6089536 |
T |
|
| Q |
135 |
ggatgatacagtctttgtcattggcatctatggaatgggaggagtaggaaaaactttactggcgactctcgtggagaacgaagtgaaaaggaaagcaact |
234 |
Q |
| |
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|||||| ||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| ||||||||| || || |
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| T |
6089535 |
ggatgaccaagtttttgttattggtatatatggaatggggggagtgggaaaaactttacttgcaactctcgtcgagaatgaagtaaaaaggaaaccacct |
6089436 |
T |
|
| Q |
235 |
tttaaacatgtgttttgggt |
254 |
Q |
| |
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|| | | ||||||||||||| |
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| T |
6089435 |
ttcatagatgtgttttgggt |
6089416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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