View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19831_high_6 (Length: 310)
Name: NF19831_high_6
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19831_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 10982033 - 10981902
Alignment:
| Q |
1 |
cgaccatcctatcctgtcttctcttctcctctactcgttctgtcattctcccattaatagcaaggagtaagggttggccaattcaaattctgcattaaat |
100 |
Q |
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| T |
10982033 |
cgaccatcctatcctgtcttctcttctcatctactcgttctgtcattctcccattaatagcaaggagtaagggttggccaattcaaattctgcattaaat |
10981934 |
T |
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| Q |
101 |
gcccatttatattatgttcatctcaaaatata |
132 |
Q |
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| T |
10981933 |
gcccatttatattatgttcatctcaaaatata |
10981902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 10981439 - 10981368
Alignment:
| Q |
231 |
gttgttaatctttcaattttcagggaaaatagatactgataacatgaaattcgattgtgaagtaagtataat |
302 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10981439 |
gttgttaatctttcaattttcaagggaaatagatactgataacatgaaattcgattgtgaagtaagtataat |
10981368 |
T |
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