View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19831_high_9 (Length: 262)
Name: NF19831_high_9
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19831_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 28639754 - 28639994
Alignment:
| Q |
8 |
agataattctaagtacagatgacctctaactataacttaagaaccgaaaaaattaattgaaatat--ggatattaacaaccaaagcatataatgtcatca |
105 |
Q |
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| T |
28639754 |
agataattctaagtacagatgacctctaactataacttaagaaccgaaaaaattaattgaaatatatggatattaacaaccaaagcatataatgccatca |
28639853 |
T |
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| Q |
106 |
ttgattagaaggggtaatgcttaatgtttaaagtaagagtacaccaccaattttgtctaggattttacacactttttcttaattggtctttcaagc-aaa |
204 |
Q |
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| T |
28639854 |
ttgattagaaggggtaatgcttaatgtttaaagtaagagtacaccaccaattttgtctaggattttacacactttttcttaattggtctttcaagcaaaa |
28639953 |
T |
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| Q |
205 |
ctaaaataacatttagtctatgactattgagtatggaacat |
245 |
Q |
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| T |
28639954 |
aaaaaataacatatggtctatgactattgagtatggaacat |
28639994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 49 - 240
Target Start/End: Original strand, 28649098 - 28649291
Alignment:
| Q |
49 |
aaccgaaaaaattaattgaaatatggatattaacaaccaaagcatataatgtcatcattgattagaaggggtaatgct----taatgtttaaagtaagag |
144 |
Q |
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| T |
28649098 |
aaccgaaaaaattaatggaaataaggatattaacaaccaaagaatat--tgttatcattgattagaatggttaatgcttgcttaatgttaaaagtaagag |
28649195 |
T |
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| Q |
145 |
tacaccaccaattttgtctaggattttacacactttttcttaattggtctttcaagcaaactaaaataacatttagtctatgactattgagtatgg |
240 |
Q |
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| T |
28649196 |
tataccaccaaatttgtctaggattttccacactttttcttatttggtctttcaagcaaacaaaaataacatatagtttatgcttgttgagtatgg |
28649291 |
T |
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