View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19831_low_1 (Length: 437)
Name: NF19831_low_1
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19831_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 1984842 - 1984434
Alignment:
| Q |
19 |
caaagggcctttgcatggaattaaaaaggtacttatatctgcacctctaaaagtccttaaaaaattaccttgggaaaacataacaaaccttccaggtatc |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1984842 |
caaagggcctttgcatggaatcaaaaaggtacttatatctgcacctctaaaagtccttaaaaagttaccttgggaaaacataaccaaccttccaggaatc |
1984743 |
T |
|
| Q |
119 |
aaacttgtaaaacaacctattgaacacttgttaaactctcaaaagaaagaagaggaaaaaccaaacgatgaaaactcaagtactctaaagaacaaaacac |
218 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
1984742 |
aaacttgtaaaacaacctattgaatactttttaaacactcaaaagaaagaagaggaaaaaccaaaagatgaaaactctagtactctaaagaacaaaacac |
1984643 |
T |
|
| Q |
219 |
ccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttga |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
1984642 |
ccttggtggaggaaatcgctattccttctgttgaacaacttgtgactgcaggggttaatttcttacctgcaaaaggaagcatatcaagcattagttttga |
1984543 |
T |
|
| Q |
319 |
tgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatcc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1984542 |
tgctaaaacaaacacttttcaccttcccacaattagtttggatgtcaacaccgaagtttttcttcgaaacttggttgcatacgaatcatcggttggatcg |
1984443 |
T |
|
| Q |
419 |
ggacctttg |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
1984442 |
ggacctttg |
1984434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 216 - 427
Target Start/End: Complemental strand, 1977724 - 1977513
Alignment:
| Q |
216 |
cacccttggtggaggaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattt |
315 |
Q |
| |
|
|||| ||| |||| |||||| |||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1977724 |
cacctttgatggatgaaatcgctattccttctgttgagcaacttgtgcttgcaggagttaatttcttacctacaaatggaagcatatcaagcattagttt |
1977625 |
T |
|
| Q |
316 |
tgatgctaaaacaaacacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttgga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
1977624 |
tgatgctaaaacaaacacttttcaccttcccatgattagattggatgttaacaccgaagtttttctaagaaacttggttgcatatgaatcatcggttgga |
1977525 |
T |
|
| Q |
416 |
tccggacctttg |
427 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
1977524 |
tcgggacctttg |
1977513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 230 - 423
Target Start/End: Original strand, 1948696 - 1948889
Alignment:
| Q |
230 |
gaaatcactattccttctgttgaacaacttgtgactgcgggggttaatttcttacctacaaatggaagcatatcaagcattaattttgatgctaaaacaa |
329 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| | || || ||||| | ||||| ||||| ||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
1948696 |
gaaatcactattccttctgttaaagaacttgtgaaatcaggagtgaatttttctcctactaatgggagcatatcaagtattagttttgatgcaaaaacaa |
1948795 |
T |
|
| Q |
330 |
acacttttcaccttcccacaattagtttggatgtgaacaccgaagttttctttagaaacttggttgcatacgaatcatcggttggatccggacc |
423 |
Q |
| |
|
|||||| ||||||| | || |||||||||| || ||||||||||| | |||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
1948796 |
gaactttttaccttcctattatcggtttggatgttaataccgaagtttttctaagaaacttggttgcgtatgaatcatcggttggatcgggacc |
1948889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University