View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19831_low_11 (Length: 217)
Name: NF19831_low_11
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19831_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 14185334 - 14185494
Alignment:
| Q |
11 |
tgaggagaaatgaattttataatgactaaaacaaaacatcaaagatcatataagcatcgttatatacacaatttttagaatttaaatatttttataaact |
110 |
Q |
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| T |
14185334 |
tgaggagaaatgaattttataatgactaaaacaaaacatcaaagatcatataagcatcgttatatacacaatttttagaatttaaatatttttataaact |
14185433 |
T |
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| Q |
111 |
ta--------tacaattctcttatgtcactgaaagggtgaaggtcctagaaattcttacta |
163 |
Q |
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| T |
14185434 |
tatacacttgtacaattctcttatgtcactgaaagggtgaaggtcctaaaaattcttacta |
14185494 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 11295603 - 11295523
Alignment:
| Q |
83 |
ttttagaatttaaatatttttataaacttat-acaattctcttatgtcactgaaagggtgaaggtcctagaaattcttacta |
163 |
Q |
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| T |
11295603 |
ttttagaattcaaatatttttatggacctttgacaattctcttatgtcactg-aagggtgaaagtcttagaaatgcttacta |
11295523 |
T |
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