View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19831_low_3 (Length: 350)
Name: NF19831_low_3
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19831_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 42789061 - 42789380
Alignment:
| Q |
15 |
atctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaact |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42789061 |
atctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaact |
42789160 |
T |
|
| Q |
115 |
cgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42789161 |
cgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagaca |
42789260 |
T |
|
| Q |
215 |
atgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789261 |
atgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgt |
42789360 |
T |
|
| Q |
315 |
ctgagataaggtggatgttc |
334 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42789361 |
ctgagataaggtggatgttc |
42789380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 42798599 - 42798918
Alignment:
| Q |
15 |
atctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaact |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42798599 |
atctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaaggtaaaact |
42798698 |
T |
|
| Q |
115 |
cgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42798699 |
cgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagaca |
42798798 |
T |
|
| Q |
215 |
atgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798799 |
atgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgt |
42798898 |
T |
|
| Q |
315 |
ctgagataaggtggatgttc |
334 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42798899 |
ctgagataaggtggatgttc |
42798918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 86 - 334
Target Start/End: Original strand, 34566805 - 34567053
Alignment:
| Q |
86 |
tgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggta |
185 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
34566805 |
tgtgtttgtgaagatattaaggtaaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggta |
34566904 |
T |
|
| Q |
186 |
gaccgagatcttttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagagga |
285 |
Q |
| |
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||||||||||||| || |||||||||||||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| || |
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| T |
34566905 |
gaccgagatctttagaaagactataaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtga |
34567004 |
T |
|
| Q |
286 |
attaaacactgatcctgagtagatttcgtctgagataaggtggatgttc |
334 |
Q |
| |
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| || ||||| || ||||||||||||||||||| |||||| |||||| |
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| T |
34567005 |
agagaaaactgagcccgagtagatttcgtctgagacaaggtgtatgttc |
34567053 |
T |
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