View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19831_low_4 (Length: 332)
Name: NF19831_low_4
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19831_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 25934062 - 25933748
Alignment:
| Q |
1 |
tcatcttggtacattatgcagacacatgaactggaaagtcatacatcaccaatgtccttagttattaatttgaagcaacttcatgtgtttttgtgtatga |
100 |
Q |
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| T |
25934062 |
tcatcttggtacattatgcagacacatgaactggaaagtcatacatcaccaatgtccttagttattaatttgaagcaacttcatgtgtttttgtgtatga |
25933963 |
T |
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| Q |
101 |
aaggatctctcgtgatctccgctaaactggtaacctatgaaaatcacttaaccaaaattttacagttcnnnnnnnnnnnnnncttttttctttcatcata |
200 |
Q |
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| T |
25933962 |
aaggatctctcgtgatctccgctaaactggtaacctatgaaaatcacttaaccaaaattttacagttcaaaaaagaaaaaaacttttttctttcatcata |
25933863 |
T |
|
| Q |
201 |
aagaaataaaataagacatgtatgattgcattaaaaaacaaactactttttgacacagaaaaactcaagtcacacattgaaaggagatgatacccgaaat |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25933862 |
aagaaataaaaaaagacatgtatgattgcattaaaaaacaaactactttttgacacagaaaaactcaagtcacacattgaaaggagataatacccgaaat |
25933763 |
T |
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| Q |
301 |
atttttataaagagt |
315 |
Q |
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| T |
25933762 |
atttttataaagagt |
25933748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 26101485 - 26101428
Alignment:
| Q |
100 |
aaaggatctctcgtgatctccgctaaactggtaacctatgaaaatcacttaaccaaaa |
157 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||| || ||||| ||||| |
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| T |
26101485 |
aaaggatctcttgtgatcttcgctaaactggtaacctatgaaagtcgcttaatcaaaa |
26101428 |
T |
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