View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19831_low_7 (Length: 302)

Name: NF19831_low_7
Description: NF19831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19831_low_7
NF19831_low_7
[»] chr7 (13 HSPs)
chr7 (22-286)||(43057333-43057602)
chr7 (22-286)||(152021-152283)
chr7 (90-286)||(35089831-35090027)
chr7 (22-286)||(30110966-30111233)
chr7 (22-286)||(27418299-27418563)
chr7 (110-286)||(40097257-40097434)
chr7 (22-189)||(47913988-47914153)
chr7 (186-286)||(47914878-47914978)
chr7 (111-286)||(39301002-39301166)
chr7 (22-74)||(33474862-33474914)
chr7 (22-74)||(12253075-12253127)
chr7 (196-286)||(46037181-46037271)
chr7 (22-58)||(47912629-47912665)
[»] chr8 (29 HSPs)
chr8 (22-286)||(29259933-29260197)
chr8 (22-286)||(7148203-7148466)
chr8 (22-286)||(41386525-41386791)
chr8 (22-286)||(40264939-40265202)
chr8 (90-286)||(2112954-2113150)
chr8 (22-286)||(41965459-41965719)
chr8 (92-286)||(42275135-42275330)
chr8 (22-286)||(43605026-43605285)
chr8 (93-286)||(4655210-4655403)
chr8 (127-286)||(10802533-10802692)
chr8 (110-286)||(28620007-28620183)
chr8 (144-286)||(9457706-9457848)
chr8 (111-286)||(37567118-37567293)
chr8 (110-286)||(4302551-4302729)
chr8 (111-286)||(30382420-30382595)
chr8 (138-286)||(8502795-8502943)
chr8 (138-286)||(35142205-35142353)
chr8 (160-286)||(9209199-9209325)
chr8 (91-171)||(41965324-41965404)
chr8 (22-74)||(9457886-9457938)
chr8 (130-190)||(40013264-40013324)
chr8 (22-74)||(41965238-41965290)
chr8 (22-72)||(42275351-42275401)
chr8 (22-74)||(2113170-2113222)
chr8 (22-74)||(43489259-43489311)
chr8 (22-60)||(10796029-10796067)
chr8 (35-72)||(4655421-4655458)
chr8 (254-286)||(1605902-1605934)
chr8 (90-130)||(9457832-9457872)
[»] chr3 (24 HSPs)
chr3 (22-286)||(24150491-24150753)
chr3 (22-278)||(26005517-26005768)
chr3 (93-286)||(38629528-38629721)
chr3 (22-286)||(30589002-30589267)
chr3 (92-286)||(35731095-35731289)
chr3 (91-284)||(50900173-50900366)
chr3 (22-285)||(26293227-26293487)
chr3 (22-286)||(36054661-36054928)
chr3 (110-286)||(46251948-46252124)
chr3 (110-286)||(13662711-13662887)
chr3 (152-286)||(26005770-26005904)
chr3 (22-285)||(19551821-19552068)
chr3 (111-286)||(27593315-27593490)
chr3 (111-286)||(39338046-39338218)
chr3 (123-286)||(26555977-26556123)
chr3 (110-286)||(36786134-36786309)
chr3 (149-286)||(38682589-38682728)
chr3 (123-286)||(52023961-52024120)
chr3 (22-74)||(23697351-23697403)
chr3 (22-74)||(23715807-23715859)
chr3 (22-74)||(23734263-23734315)
chr3 (22-74)||(23753927-23753979)
chr3 (22-72)||(38629459-38629509)
chr3 (22-74)||(50900092-50900144)
[»] chr6 (9 HSPs)
chr6 (22-286)||(6476369-6476634)
chr6 (144-286)||(29834064-29834206)
chr6 (144-286)||(29865498-29865640)
chr6 (118-286)||(3110038-3110206)
chr6 (110-286)||(30878015-30878191)
chr6 (111-286)||(10643758-10643935)
chr6 (196-286)||(7858205-7858295)
chr6 (22-74)||(29865407-29865459)
chr6 (196-286)||(709077-709167)
[»] chr2 (13 HSPs)
chr2 (22-286)||(29941108-29941377)
chr2 (22-286)||(6289165-6289422)
chr2 (90-286)||(45547094-45547290)
chr2 (111-286)||(11534998-11535173)
chr2 (123-286)||(24193244-24193407)
chr2 (110-286)||(20157502-20157678)
chr2 (110-286)||(34028677-34028853)
chr2 (116-286)||(11998169-11998338)
chr2 (130-286)||(24193712-24193875)
chr2 (169-257)||(45485543-45485631)
chr2 (23-74)||(21736289-21736340)
chr2 (22-74)||(7487813-7487865)
chr2 (35-74)||(35172338-35172377)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-286)||(81440-81703)
[»] chr4 (21 HSPs)
chr4 (22-286)||(8583666-8583926)
chr4 (22-286)||(42218102-42218367)
chr4 (92-286)||(44930038-44930232)
chr4 (91-286)||(3435689-3435878)
chr4 (111-286)||(52109569-52109744)
chr4 (129-286)||(8880607-8880764)
chr4 (110-286)||(26336231-26336407)
chr4 (114-286)||(45332829-45333001)
chr4 (114-286)||(45340519-45340691)
chr4 (110-286)||(25935950-25936127)
chr4 (114-286)||(42720882-42721055)
chr4 (130-286)||(33449944-33450100)
chr4 (116-286)||(47685307-47685477)
chr4 (111-286)||(54509877-54510050)
chr4 (91-272)||(7820239-7820405)
chr4 (111-286)||(40143939-40144098)
chr4 (22-74)||(44930254-44930306)
chr4 (22-74)||(56397783-56397835)
chr4 (22-71)||(3435631-3435680)
chr4 (22-74)||(7820424-7820476)
chr4 (22-74)||(42315247-42315299)
[»] scaffold0153 (1 HSPs)
scaffold0153 (22-286)||(34472-34735)
[»] chr1 (15 HSPs)
chr1 (91-286)||(45318623-45318818)
chr1 (22-286)||(52705556-52705817)
chr1 (92-286)||(26882553-26882747)
chr1 (111-286)||(36402410-36402585)
chr1 (110-286)||(1928149-1928325)
chr1 (114-286)||(29208918-29209090)
chr1 (111-286)||(33243060-33243231)
chr1 (111-286)||(33263233-33263404)
chr1 (111-286)||(10896963-10897138)
chr1 (144-242)||(45534991-45535089)
chr1 (148-233)||(9831782-9831867)
chr1 (22-74)||(45318841-45318893)
chr1 (22-71)||(26882481-26882530)
chr1 (240-286)||(9831453-9831499)
chr1 (22-74)||(45535131-45535183)
[»] chr5 (8 HSPs)
chr5 (91-286)||(40410753-40410948)
chr5 (111-286)||(6828537-6828713)
chr5 (130-286)||(17518592-17518748)
chr5 (130-286)||(10571274-10571430)
chr5 (22-74)||(3604127-3604179)
chr5 (22-74)||(13950454-13950506)
chr5 (22-74)||(40410969-40411021)
chr5 (185-261)||(2276025-2276101)
[»] scaffold0237 (2 HSPs)
scaffold0237 (144-286)||(21192-21334)
scaffold0237 (22-74)||(21102-21154)
[»] scaffold0202 (2 HSPs)
scaffold0202 (110-216)||(16303-16411)
scaffold0202 (235-286)||(16412-16463)
[»] scaffold0472 (1 HSPs)
scaffold0472 (196-269)||(1716-1789)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 43057333 - 43057602
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnn-----tgaatttgaaagagtattacaaaatct 116  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||                    |||||||| ||||||||||||||||||    
T  43057333 atatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaaaaaaatgaatttggaagagtattacaaaatct 43057432  T
Q  117 caaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcaca 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43057433 caaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcaca 43057532  T
Q  217 ataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43057533 acaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 43057602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 152283 - 152021
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||                || ||||  ||||||||||||||||| ||||    
T  152283 atatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaa--gattttggtagagtattacaaaatctaaagg 152186  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  152185 ctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaat 152086  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  152085 ccattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaattg 152021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 90 - 286
Target Start/End: Original strand, 35089831 - 35090027
Alignment:
Q  90 tgaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 189  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||    
T  35089831 tgaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacattttataccaa 35089930  T
Q  190 acaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35089931 acaatctcacaaaattcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 35090027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 30111233 - 30110966
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnn---tgaatttgaaagagtattacaaaatctca 118  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||                  |||||||| ||||||||||||||||||||    
T  30111233 atatataatctgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaataaaaaaatgaatttggaagagtattacaaaatctca 30111134  T
Q  119 aggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaat 218  Q
    ||| ||||||||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||     
T  30111133 aggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctcacaaaatccattactcacaac 30111034  T
Q  219 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||    
T  30111033 aatccattaaaatccgtagagttttgaataatagcagacaatttttaagttatgcaaaatctcaattg 30110966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 27418299 - 27418563
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||| ||| |||||||| || ||||||||||||||||||||||||||||               |||||||| |||||||||||||||||||||||    
T  27418299 atatataatctgtcattgttatagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaatgaatttggaagagtattacaaaatctcaagg 27418398  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     | |||||||||||   ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||    
T  27418399 ctttgtgtgggagaccaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctcacaaaatccattactcacaacaat 27418498  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  27418499 ccattaaaatccgtagagttttgattactagcagacaatttttaagttatgcaaaatctcaattg 27418563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 40097434 - 40097257
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccat 208  Q
    |||||||||||  ||||||||||||| | |||| ||||||| ||||||||||||||||||||||| | ||||||||| |||| | | |||||||||||||    
T  40097434 aaaatctcaagactatgtgtgggagacaaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacattaaaaagtctcacaaaatccat 40097335  T
Q  209 tactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    || ||| || ||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| |||||    
T  40097334 tagtcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattg 40097257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 47913988 - 47914153
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||               |||||||| |||||||||||||||||||||||    
T  47913988 atatataacctaccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaa--tgaatttggaagagtattacaaaatctcaagg 47914085  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 189  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47914086 ctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 47914153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 47914878 - 47914978
Alignment:
Q  186 ctaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatt 285  Q
    ||||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  47914878 ctaaacaatctcacaaaatccattactcacaacaatccataaaaatctgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaatt 47914977  T
Q  286 g 286  Q
    |    
T  47914978 g 47914978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 39301002 - 39301166
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    ||||||||||| ||| ||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||            |||||||    
T  39301002 aaatctcaaggctatatgtgggagacaaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacattaaa------------atccatt 39301089  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||| |||| |||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  39301090 actcacaacaatctattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 39301166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 33474914 - 33474862
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  33474914 atatataacatgccattgttacagtagaacagaaaagaatttggaagaaacgt 33474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 12253075 - 12253127
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||||| ||||||||||| || |||||||||||||||||| |||||||||    
T  12253075 atatataacttgccattgttatagtagaacagaaaagaatttgaaagaaacgt 12253127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 46037181 - 46037271
Alignment:
Q  196 tcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||| |   ||| ||||||| ||||||  |||| |||||||||||| |||||||||  ||||| |||  ||||||||||||    
T  46037181 tcacaaaatccattccatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatctcaattg 46037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 47912665 - 47912629
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaag 58  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  47912665 atatataacctaccattgttacagtagaacagaaaag 47912629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 29259933 - 29260197
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||               |||||||| || ||||||||||||||||||||    
T  29259933 atatataacctgccattgttacaatagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaatgaatttggaatagtattacaaaatctcaagg 29260032  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||    
T  29260033 ctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaaacaatctcacaaaatccattactcacaacaat 29260132  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260133 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 29260197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 7148466 - 7148203
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||| || |||||||||||| | ||||||||||||||||||||||||||               |||||||| |||||||||||||||||||||||    
T  7148466 atatataatctaccattgttacagtaaaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaa-tgaatttggaagagtattacaaaatctcaagg 7148368  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  7148367 ctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaat 7148268  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  7148267 ccattaaaatccgtagagttttgaatgccagtagacaatttctaagttatgcaaaatctcaattg 7148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 41386525 - 41386791
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnn--tgaatttgaaagagtattacaaaatctcaa 119  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||                 |||||||| |||||||||||||||||||||    
T  41386525 atatataacctgcgattgttacaatagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaaaatgaatttggaagagtattacaaaatctcaa 41386624  T
Q  120 ggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaata 219  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |    
T  41386625 ggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaaca 41386724  T
Q  220 atccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41386725 atccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattg 41386791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 40264939 - 40265202
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||                || ||||  ||||||||||||||||| ||||    
T  40264939 atatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaa-gattttggtagagtattacaaaatctaaagg 40265037  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  40265038 ctacgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaat 40265137  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40265138 ccattaaaatccatagagttttgaataccattagacaatttttaagttatgcaaaatctcaattg 40265202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 90 - 286
Target Start/End: Complemental strand, 2113150 - 2112954
Alignment:
Q  90 tgaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 189  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  2113150 tgaatttggaagagtattacaaaatctcaaggctatatgtgggagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacactaa 2113051  T
Q  190 acaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2113050 acaatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaattg 2112954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 41965459 - 41965719
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||                ||||||| |||||||||||||||||||||||    
T  41965459 atatataacctgccatttttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaa--gaatttggaagagtattacaaaatctcaagg 41965556  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||    
T  41965557 ctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacactaaataatctcacaaaatccattactcacaacaat 41965656  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  41965657 ccattaaaatatgtagagttttgaataccagtagacaa--tttaagttatgcaaaatctcaattg 41965719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 92 - 286
Target Start/End: Complemental strand, 42275330 - 42275135
Alignment:
Q  92 aatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattg-ttagtaggtacattttacactaaa 190  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42275330 aatttggaagagtattacaaaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaaa 42275231  T
Q  191 caatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42275230 caatctcacaaaatccattactcacaacaatccataaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattg 42275135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 43605026 - 43605285
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||                ||||||| |||||||||||||||||||||||    
T  43605026 atatataacctgccattgttacagtagaacaaaaaagaatttggaagaaacgtaaaaaaaaaaa-----gaatttggaagagtattacaaaatctcaagg 43605120  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |||    
T  43605121 ctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtacattttacattaaacaatctcacaaaatccattactcacaacaat 43605220  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  43605221 ccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcgaaatctcaattg 43605285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 93 - 286
Target Start/End: Complemental strand, 4655403 - 4655210
Alignment:
Q  93 atttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 192  Q
    ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4655403 atttggaagagtatcacaaaatctcaaggctatgtgtgagagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacactaaaca 4655304  T
Q  193 atttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    || ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4655303 atctcacaaaatccattactcataacaatccattaaaatccgtagagttttgaataccggtagacaatttttaagttatgcaaaatctcaattg 4655210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 10802533 - 10802692
Alignment:
Q  127 tgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccatt 226  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  10802533 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccatt 10802632  T
Q  227 aaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10802633 aaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattg 10802692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 28620183 - 28620007
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| |||| |||||||| ||||||| | ||||    
T  28620183 aaaatctcaaggttatgtgtgggagacagaaaagtctcaagattaggtgtgagattgttagtaggtacattgtacattaaacaatctcacaaagttcatt 28620084  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28620083 actcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 28620007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 144 - 286
Target Start/End: Complemental strand, 9457848 - 9457706
Alignment:
Q  144 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagtttt 243  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  9457848 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 9457749  T
Q  244 gaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  9457748 gaataccgatagacaatttttaagttatgcaaaatctcaattg 9457706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 37567118 - 37567293
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    |||||| |||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||| |   |||||||||||||||    
T  37567118 aaatcttaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaaaagcctcacaaaatccatta 37567217  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||| |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  37567218 ctcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 37567293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 110 - 286
Target Start/End: Original strand, 4302551 - 4302729
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaa--gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatcca 207  Q
    |||||||||||| ||||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||| | | || | |||||||    
T  4302551 aaaatctcaaggctatgtgtgggagacaaaaaaatgtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaaagtctcgctaaatcca 4302650  T
Q  208 ttactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||| ||||||||||||||| || | |||||||||| | ||||||||||||||||| ||||||||||||||||    
T  4302651 ttactcacaacaatccattaaaatccttacaattttgaatactaatagacaatttttaagttgtgcaaaatctcaattg 4302729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 30382420 - 30382595
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||| | ||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | | |||||||||  ||||    
T  30382420 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaattgatta 30382519  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  30382520 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 30382595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 138 - 286
Target Start/End: Complemental strand, 8502943 - 8502795
Alignment:
Q  138 gaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtag 237  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||| |||||||||||||||||||    
T  8502943 gaaaagtcttaaggctatgtgtgagattgttagtaggtacattttacactaaaaagtctcataaaatccattactcacaacaatccattaaaatccgtag 8502844  T
Q  238 agttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    | |||| ||||||| ||||||||||||||||| |||||||||| |||||    
T  8502843 aattttaaataccaatagacaatttttaagttgtgcaaaatcttaattg 8502795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 286
Target Start/End: Complemental strand, 35142353 - 35142205
Alignment:
Q  138 gaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtag 237  Q
    |||||||||  ||||||| ||||||| |||||||||||| ||||||||||||| | | ||| |||||||||||||||||| |||| | |||||||||||     
T  35142353 gaaaagtcttgaggctagttgtgagagtgttagtaggtagattttacactaaaaagtctcataaaatccattactcacaacaatctaataaaatccgtaa 35142254  T
Q  238 agttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
      |||||||||||| ||||||||||||||||| | |||||||| |||||    
T  35142253 tattttgaataccaatagacaatttttaagttgtacaaaatcttaattg 35142205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 286
Target Start/End: Complemental strand, 9209325 - 9209199
Alignment:
Q  160 gagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaa 259  Q
    ||||||||||||||||||||||||||||||| | | |||||||||  ||||| ||||| || | |||||||||| ||||||||||||||||| |||||||    
T  9209325 gagattgttagtaggtacattttacactaaaaagtctcacaaaataaattacccacaacaaactattaaaatccttagagttttgaataccaatagacaa 9209226  T
Q  260 tttttaagttatgcaaaatctcaattg 286  Q
    |||||||||| | |||||| |||||||    
T  9209225 tttttaagttgtccaaaatttcaattg 9209199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 41965324 - 41965404
Alignment:
Q  91 gaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagt 171  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41965324 gaatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagt 41965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 9457938 - 9457886
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  9457938 atatatatcctgccattgttacggtagaacagaaaagaatttggaagaaacgt 9457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 40013264 - 40013324
Alignment:
Q  130 gggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 190  Q
    |||||| |||||||||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  40013264 gggagacagaaaagtctcaaggccaagtgtgagattgttagtaggtatattttatactaaa 40013324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 41965238 - 41965290
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  41965238 atatataacctgccattgttacattagaacagaaaagaatttggaataaacgt 41965290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 42275401 - 42275351
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaac 72  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  42275401 atatataacctaccattgttacagtagaacaaaaaagaatttggaagaaac 42275351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 2113222 - 2113170
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||||||||||||| |||||| ||| ||||||||| ||||||||||||||    
T  2113222 atatataacctgccattattacagtagagcagaaaagattttggaagaaacgt 2113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 43489311 - 43489259
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| |||||||    
T  43489311 atatataatctgccattgttacagtagaacaaaaaagaatttggatgaaacgt 43489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 10796029 - 10796067
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaa 60  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10796029 atatataacctgccattgttacagtagaacagaaaagaa 10796067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 4655458 - 4655421
Alignment:
Q  35 cattgttacaggagaacagaaaagaatttggaagaaac 72  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4655458 cattgttacagtagaacagaaaagaatttggaagaaac 4655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 1605902 - 1605934
Alignment:
Q  254 agacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||||||    
T  1605902 agacaatttttaagttatgcaaaatctcaattg 1605934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 9457872 - 9457832
Alignment:
Q  90 tgaatttgaaagagtattacaaaatctcaaggatatgtgtg 130  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  9457872 tgaatttggaagagtattacaaaatctcaaggttaggtgtg 9457832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 24150491 - 24150753
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||                ||||||| |||||||||||||||||||||||    
T  24150491 atatataacctgccatttttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaa--gaatttggaagagtattacaaaatctcaagg 24150588  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  24150589 ctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaat 24150688  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24150689 ccattaaaatccgtagagttttgaataccagtggacaatttttaagttatgcaaaatctcaattg 24150753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 26005517 - 26005768
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||||||               |||||||| |||||||||||||||||||||||    
T  26005517 atatataacatgtcattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaa-----tgaatttggaagagtattacaaaatctcaagg 26005611  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  26005612 ctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaat 26005711  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaat 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26005712 ccattaaaatccgtagagttttgaataccaatagacaatttttaagttatgcaaaat 26005768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 93 - 286
Target Start/End: Original strand, 38629528 - 38629721
Alignment:
Q  93 atttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 192  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629528 atttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaaca 38629627  T
Q  193 atttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38629628 atctcacaaaatccattactcacaacaatccattaaaatccgtatagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 38629721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 30589267 - 30589002
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||               |||||||| |||||||||||||||||| ||||    
T  30589267 atatataacctgtcattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaatgaatttggaagagtattacaaaatctgaagg 30589168  T
Q  122 atatgtgtgggagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataa 220  Q
     |||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  30589167 ctatgtgtgggtgataaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaa 30589068  T
Q  221 tccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30589067 tccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattg 30589002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 92 - 286
Target Start/End: Complemental strand, 35731289 - 35731095
Alignment:
Q  92 aatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 191  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  35731289 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaagtctcaatgctaggtgtgagattgttagcaggtgcattttacactaaac 35731190  T
Q  192 aatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35731189 aatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 35731095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 91 - 284
Target Start/End: Original strand, 50900173 - 50900366
Alignment:
Q  91 gaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 190  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  50900173 gaatttggaagagtattacaaaatctcaaggaaatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacattaaa 50900272  T
Q  191 caatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 284  Q
    |||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50900273 caatctcacaaaatccattactcacaacaatccattaaaatctctagagttttgaataccagtagacaatttttaagttatgcaaaatctcaat 50900366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 26293227 - 26293487
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||| ||                ||||||| |||||||||||||||||||||||    
T  26293227 atatataacctgccattgttacagtagaatagaaaagaatttggaagaaaagtaaaaaaaaaaaaa---gaatttggaagagtattacaaaatctcaagg 26293323  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     ||||||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  26293324 ctatgtgtgggagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacactaaacaatcacacaaaatccattactcacaacaat 26293423  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatt 285  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  26293424 ccattaaaatccgtagagttttgaatactagtaaacaatttttaagttatgcaaaatctcaatt 26293487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 36054661 - 36054928
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnn---tgaatttgaaagagtattacaaaatctca 118  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||                  |||||||| ||||||||||||||||||||    
T  36054661 atatataatctgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaaaaatgaatttggaagagtattacaaaatctca 36054760  T
Q  119 aggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaat 218  Q
    ||| ||||||||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||     
T  36054761 aggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctcacaaaatccattactcacaac 36054860  T
Q  219 aatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||    
T  36054861 aatccattaaaatccgtagagttttgaaaactagcagacaatttttaagttatgcaaaatctcaattg 36054928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 110 - 286
Target Start/End: Original strand, 46251948 - 46252124
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46251948 aaaatctcgagcttatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 46252047  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46252048 actcacaacaatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaattg 46252124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 13662887 - 13662711
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13662887 aaaatctcaaggttatgtgtgggaggcagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccatt 13662788  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  13662787 actcacaacaatccattaaaacccgtagtgttttgaatacgagtagacaatttttaagttgtgcgaaatctcaattg 13662711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 152 - 286
Target Start/End: Original strand, 26005770 - 26005904
Alignment:
Q  152 ctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaatacca 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26005770 ctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagagttttgaatacca 26005869  T
Q  252 gtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||||||||    
T  26005870 gtagacaatttttaagttatgcaaaatctcaattg 26005904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 285
Target Start/End: Original strand, 19551821 - 19552068
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||                 |||||| |||||||||||||||||||||||    
T  19551821 atatataacctgccattgt-acagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaaaa-----aatttggaagagtattacaaaatctcaagg 19551914  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          ||| |||    
T  19551915 ctatatgtgggagaaagaaaagtctcaaggctaggtgtgagattgttattaggtacattttacactaaacaatttcacaaaat----------caacaat 19552004  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatt 285  Q
    | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  19552005 caattaaaatctgtagagttttgaataccactagacaatttttaagttatgcaaaatcttaatt 19552068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 27593490 - 27593315
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||| | ||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  27593490 aaatctcaaagctatgtgttggagacaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 27593391  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  27593390 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagatgtgcaaaacctcaattg 27593315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 39338046 - 39338218
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    |||||| |||| ||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||  ||||||||||    
T  39338046 aaatctgaaggctatttgtgggagaca-aaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctca--aaatccatta 39338142  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  39338143 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 39338218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 123 - 286
Target Start/End: Complemental strand, 26556123 - 26555977
Alignment:
Q  123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                    
T  26556123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatcc---------------- 26556040  T
Q  223 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26556039 -attaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattg 26555977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 36786309 - 36786134
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||| |||||||| |||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||| | | ||| ||||||||||    
T  36786309 aaaatctcaaggctatgtgtgagagacaaaaaagtctcaaggc-aggtgtgtgattgttagtaggtacattttacactaaaaagtctcataaaatccatt 36786211  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||| ||| ||||||||||| || | |||||||||||| ||||||| ||| ||||| ||||||||||||||||    
T  36786210 actcacaacaattcattaaaatccttacaattttgaataccaatagacaagtttaaagttttgcaaaatctcaattg 36786134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 38682728 - 38682589
Alignment:
Q  149 aggctaggtgtgagattgttagtaggtac---attttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttga 245  Q
    |||||||||||||||||||||||||||||   |||||| |||||| ||| || ||||||||||||||||||| |||||||||||||||||||| ||||||    
T  38682728 aggctaggtgtgagattgttagtaggtactacattttatactaaaaaatctctcaaaatccattactcacaacaatccattaaaatccgtagaattttga 38682629  T
Q  246 ataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  38682628 ataccaata-acaatttttaagttgtgcaaaatctcaattg 38682589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 52023961 - 52024120
Alignment:
Q  123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatc 222  Q
    ||||||||||||| | ||||||||    | ||||||||||||||||| ||||||||||||| |||||| | | ||  |||||||||||||||||| ||||    
T  52023961 tatgtgtgggagacaaaaaagtct----gttaggtgtgagattgttactaggtacattttatactaaaaagtctcttaaaatccattactcacaacaatc 52024056  T
Q  223 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||| |||||| ||| | |||||||||||||| || ||||||||||||||||    
T  52024057 cattaaaatccgtagaattttgattactaatagacaatttttaaattgtgcaaaatctcaattg 52024120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 23697403 - 23697351
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  23697403 atatataacctgccattgttacaatagaacataaaagaatttggaagaaacgt 23697351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 23715859 - 23715807
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  23715859 atatataacctgccattgttacaatagaacataaaagaatttggaagaaacgt 23715807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 23734315 - 23734263
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  23734315 atatataacctgccattgttacaatagaacataaaagaatttggaagaaacgt 23734263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 23753979 - 23753927
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  23753979 atatataacctgccattgttacaatagaatagaaaagaatttggaagaaacgt 23753927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 38629459 - 38629509
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaac 72  Q
    |||||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  38629459 atatataatctgccattgttacagtagaacagaaaagaatttgaaagaaac 38629509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 50900092 - 50900144
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||||| ||||||||||| || | ||||||||||||||||||||||||||    
T  50900092 atatataacatgccattgttagagtataacagaaaagaatttggaagaaacgt 50900144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 6476369 - 6476634
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnn-tgaatttgaaagagtattacaaaatctcaag 120  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  6476369 atatataacatggcattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaatatatatgaatttgaaagagtattacaaaatctcaag 6476468  T
Q  121 gatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataa 220  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||    
T  6476469 gctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaaacaatctcacaaaatccattactcacaacaa 6476568  T
Q  221 tccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6476569 tccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattg 6476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 29834064 - 29834206
Alignment:
Q  144 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagtttt 243  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  29834064 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29834163  T
Q  244 gaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  29834164 gaataccgatagacaatttttaagttatgcaaaatctcaattg 29834206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 29865498 - 29865640
Alignment:
Q  144 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagtttt 243  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  29865498 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 29865597  T
Q  244 gaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  29865598 gaataccgatagacaatttttaagttatgcaaaatctcaattg 29865640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 118 - 286
Target Start/End: Original strand, 3110038 - 3110206
Alignment:
Q  118 aaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaa 217  Q
    |||| |||||||||||||||||||||||| ||  ||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  3110038 aaggctatgtgtgggagatagaaaagtcttaatactaggtgcgagattgtcagtatgtacattttacactaaacaatctcacaaaatccattactcacaa 3110137  T
Q  218 taatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
     |||||||||||||||||||||||||||||| | | | |||||||| |||||| |||||||||||||||    
T  3110138 caatccattaaaatccgtagagttttgaataactgcacacaattttcaagttaggcaaaatctcaattg 3110206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 30878191 - 30878015
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||  ||||||||||||| | ||||||||||||||||| ||||||||||||||||| | |||||||||||||| | | ||||||||||||||    
T  30878191 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 30878092  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| || ||||||||||||||| |||| |||||||||||| ||||||||||||||| | | |||||||| |||||    
T  30878091 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagctgtacaaaatctgaattg 30878015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 10643758 - 10643935
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    |||||| |||| ||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  10643758 aaatcttaaggctatgtgtgggagacaaaaaagtcttaagattaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 10643857  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatg--caaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||| ||||| ||||||||||||||||| ||  ||||||||||||||    
T  10643858 ctcacaacaatccattaaaatccttacaattttgattaccaatagacaatttttaagttgtgatcaaaatctcaattg 10643935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 7858205 - 7858295
Alignment:
Q  196 tcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||| ||||||||||| ||| |||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||    
T  7858205 tcacaaaatctattactcacaacaatgcattaaaatccgtagaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattg 7858295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 29865407 - 29865459
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  29865407 atatatatcctgccattgttacagtagaacagaaaagaatttggaagaaacgt 29865459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 709167 - 709077
Alignment:
Q  196 tcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||   ||| ||||||| ||||||  |||| |||||||||||| |||||||||  ||||| |||  |||| |||||||    
T  709167 tcacaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatttcaattg 709077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 29941377 - 29941108
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt-----nnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatct 116  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||                    |||||||| ||||||||||||||||||    
T  29941377 atatataacatgccattgttacagtagaacagaaaagaatttggaagaaacgtaaaaaaaaaataaaaaaaaatgaatttggaagagtattacaaaatct 29941278  T
Q  117 caaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcaca 216  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29941277 caaggctatatgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcaca 29941178  T
Q  217 ataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29941177 acaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 29941108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 6289165 - 6289422
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||                 ||  || |||||||||||||||||||||||    
T  6289165 atatataacctgccattgttacagtagaacagaaaagaatttggaataaacgtaaaataaaat-------aaaatggaagagtattacaaaatctcaagg 6289257  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  6289258 ctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaatccattactcacaacaat 6289357  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  6289358 ccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaattg 6289422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 90 - 286
Target Start/End: Complemental strand, 45547290 - 45547094
Alignment:
Q  90 tgaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 189  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45547290 tgaatttggaagtgtattacaaaatctcaaggctatgtgtgggagatataaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaa 45547191  T
Q  190 acaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45547190 acaatctcacaaaatccattacttacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattg 45547094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 11535173 - 11534998
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||| | ||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  11535173 aaatctcaaagctatgtgtgggagacaaaaaagtctcaaggttatgtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 11535074  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  11535073 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 11534998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 123 - 286
Target Start/End: Original strand, 24193244 - 24193407
Alignment:
Q  123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatc 222  Q
    ||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||    
T  24193244 tatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacaacaatc 24193343  T
Q  223 cattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  24193344 cattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 24193407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 110 - 286
Target Start/End: Original strand, 20157502 - 20157678
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||  ||||||||||||| | ||||||||||| ||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||||    
T  20157502 aaaatctcaagactatgtgtgggagacaaaaaagtctcaaagctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 20157601  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| || |||| |||||||||| |||| |||||||||||| |||||||| |||||||| |||||||||| |||||    
T  20157602 actcataacaatctattaaaatccttagaattttgaataccaatagacaatatttaagttgtgcaaaatctgaattg 20157678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 110 - 286
Target Start/End: Original strand, 34028677 - 34028853
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||  ||||||||| ||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||||    
T  34028677 aaaatctcaagactatgtgtggcagacaaaaaagtctcaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 34028776  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||  || ||||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||||| |||||    
T  34028777 actcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaattg 34028853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 116 - 286
Target Start/End: Original strand, 11998169 - 11998338
Alignment:
Q  116 tcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcac 215  Q
    |||||| ||||||||||||| | |||| |||||||||| |||||||||||||| |||| |||||||||||||||| | | ||||||||||||||||||||    
T  11998169 tcaaggctatgtgtgggagacaaaaaaatctcaaggct-ggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattactcac 11998267  T
Q  216 aataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    || || |||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||    
T  11998268 aacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattg 11998338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 24193875 - 24193712
Alignment:
Q  130 gggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccatt--- 226  Q
    |||||| ||||||||||  |||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||  ||||||||       
T  24193875 gggagacagaaaagtcttgaggctaagtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcacagcaatccattaaa 24193776  T
Q  227 ----aaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
        ||||| |||||| |||||||||||| || ||| |||||||||| ||||||||||||||||    
T  24193775 aattaaaattcgtagaattttgaataccaataaacagtttttaagttgtgcaaaatctcaattg 24193712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 45485631 - 45485543
Alignment:
Q  169 agtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagac 257  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||  |||||||    
T  45485631 agtaggtacattttacgctaaacaatctcacaaaatccattactcacaacaatccattaaaatccatagaattttgaatattagtagac 45485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 21736289 - 21736340
Alignment:
Q  23 tatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  21736289 tatataacatgccattgttacagtagaacagaaaagaatttgaaagaaacgt 21736340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7487813 - 7487865
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||    
T  7487813 atatataatctgtcattgttacagtagaacagaaaagaattttgaagaaacgt 7487865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 35172338 - 35172377
Alignment:
Q  35 cattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  35172338 cattgttacagtagaacataaaagaatttggaagaaacgt 35172377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 81440 - 81703
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |               |||||||| |||||||||||||||||||||||    
T  81440 atatataacctgccattgttacagtagaacagaaaagaatttagaagaaacataaaaaaaaaaaaaa-tgaatttggaagagtattacaaaatctcaagg 81538  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||    
T  81539 ctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaatctcacaaaatccattactcacaacaat 81638  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  81639 ccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaattg 81703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 8583666 - 8583926
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||| |||||||||||||| || |||||||||||||||||||| |||||||               |||||||| |||||||||||||||||||||||    
T  8583666 atatatgacctgccattgttatagtagaacagaaaagaatttggatgaaacgtaaaaaaaaaaa----tgaatttggaagagtattacaaaatctcaagg 8583761  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||    
T  8583762 ctatgtgttggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaat 8583861  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8583862 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatcttaattg 8583926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 42218102 - 42218367
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnn-tgaatttgaaagagtattacaaaatctcaag 120  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||||||||||                |||||||| |||| |||||||||||||||||    
T  42218102 atatataatctgccattgttacagtagaatagaaaagaatttggaagaaacgtaaaaaaaaaaaaaaaatgaatttggaagaatattacaaaatctcaag 42218201  T
Q  121 gatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataa 220  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||    
T  42218202 gctatgtgtaggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaa 42218301  T
Q  221 tccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42218302 tccattaaaatccgtagagttttgaatatcagtagacaatttttaagttatgcaaaatctcaattg 42218367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 92 - 286
Target Start/End: Complemental strand, 44930232 - 44930038
Alignment:
Q  92 aatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 191  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44930232 aatttggaagagtattacaaaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 44930133  T
Q  192 aatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44930132 aatctcacaaaatcctttactcacaacaatccattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattg 44930038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 91 - 286
Target Start/End: Original strand, 3435689 - 3435878
Alignment:
Q  91 gaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 190  Q
    ||||||| ||||||||||||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3435689 gaatttggaagagtattacaaaatctcaaggctatg------agatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 3435782  T
Q  191 caatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  3435783 caatctcacaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagcacacaatttttaagttatgcaaaatctcaattg 3435878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 52109744 - 52109569
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  52109744 aaatctcaaggttatgtgtgggagacagaaaagtctcaaggctaggtgtgggattgttagtaggtacattttacattaaacaatctcacaaaatccatta 52109645  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  52109644 ctcacaacaatccattaaaatccgtagagttttgaatatcggtatacaatttttaagttatgcaaaatctcaattg 52109569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 129 - 286
Target Start/End: Complemental strand, 8880764 - 8880607
Alignment:
Q  129 tgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaa 228  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  8880764 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcacaaaattcattactcacaacaatccattaa 8880665  T
Q  229 aatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8880664 aatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattg 8880607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 26336407 - 26336231
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| | | ||||||||||||||    
T  26336407 aaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccatt 26336308  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||| |||| |||||||||||| || |||||||||||||| || |||||||||||||    
T  26336307 actcacaataatccattaaaatccttagaattttgaataccaataaacaatttttaagttgtgtaaaatctcaattg 26336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 114 - 286
Target Start/End: Complemental strand, 45333001 - 45332829
Alignment:
Q  114 tctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactc 213  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||| ||||||||||||||    
T  45333001 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45332902  T
Q  214 acaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||    
T  45332901 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattg 45332829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 114 - 286
Target Start/End: Complemental strand, 45340691 - 45340519
Alignment:
Q  114 tctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactc 213  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||| ||||||||||||||    
T  45340691 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtttcataaaatccattactc 45340592  T
Q  214 acaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||    
T  45340591 acaacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattg 45340519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 25936127 - 25935950
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagata--gaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatcca 207  Q
    |||||||||||  ||||||||||||| |  |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  25936127 aaaatctcaagattatgtgtgggagacacagaaaagtctcaaggctag-tgtgagattgttaataggttcattttacactaaacaatctcacaaaatcca 25936029  T
Q  208 ttactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||| ||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25936028 ttactcacaacaatccattaaaattcgatgagttttgaatactagtagacaatttttaagttatgcaaaatctcaattg 25935950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 114 - 286
Target Start/End: Complemental strand, 42721055 - 42720882
Alignment:
Q  114 tctcaaggatatgtgtgggagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattact 212  Q
    |||||||| ||||||||||||| | |||| |||||||||||||||||||||||||| |||| |||||||||||||||| | | |||||||||||||||||    
T  42721055 tctcaaggctatgtgtgggagacaaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctcacaaaatccattact 42720956  T
Q  213 cacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| || |||||||||||| |||| |||||||||||| ||||||||||||||||| || |||||||||||||    
T  42720955 cacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattg 42720882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 33449944 - 33450100
Alignment:
Q  130 gggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaa 229  Q
    |||||| |||||||| |  |||||| |||||||||||||||||| ||||||||||||||||   | ||||||||||||||||||||||||||||||||||    
T  33449944 gggagacagaaaagtgttgaggctatgtgtgagattgttagtagatacattttacactaaaatgtctcacaaaatccattactcacaataatccattaaa 33450043  T
Q  230 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  33450044 atccgtagaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 33450100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 286
Target Start/End: Complemental strand, 47685477 - 47685307
Alignment:
Q  116 tcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcac 215  Q
    |||||| ||||||||||||| | ||||||||||||  |||||||||||||||||||||||||||||||||||||| | | || ||||||| |||||||||    
T  47685477 tcaaggctatgtgtgggagacaaaaaagtctcaagtttaggtgtgagattgttagtaggtacattttacactaaaaagtctcgcaaaatctattactcac 47685378  T
Q  216 aataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    || ||||||||||||||| || | |||||||||||| |||||||||||||||||  |||||||||||||||    
T  47685377 aacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgagcaaaatctcaattg 47685307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 54510050 - 54509877
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    ||||||||| | ||||||||||||| | |||| | ||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||||     
T  54510050 aaatctcaaagctatgtgtgggagacaaaaaaagcctcaaggttaggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccat- 54509952  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
      ||| || ||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  54509951 --tcataacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 54509877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 7820405 - 7820239
Alignment:
Q  91 gaatttgaaagagtattacaaaatctcaagga-tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaa 189  Q
    ||||||| ||||||| ||||||||| |||||  ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  7820405 gaatttggaagagtaatacaaaatcccaagggctatgtgtgggagacagaaaagtctccaggctaggtgtgagattgttagtaggtgcattttacactaa 7820306  T
Q  190 acaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatg 272  Q
    |||||                |||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7820305 acaat----------------ctcataaaaattcattaaaatccgtagagttttgaatactagtagacaatttttaagttatg 7820239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 40144098 - 40143939
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||||| ||||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||| | |                    
T  40144098 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtaggtacattttacactaaaaagt---------------- 40144015  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||| | || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  40144014 ctcacaacaatccattaaaattcttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 40143939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 44930306 - 44930254
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  44930306 atatataacctgccattgttatagtagaacagaaaagaatttggaagaaacgt 44930254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 56397835 - 56397783
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  56397835 atatataacctgccattgttgcagtagaacagaaaagaatttggaagaaacgt 56397783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 3435631 - 3435680
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaa 71  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  3435631 atatataacctgccattgttacagtagaacagaagagaatttggaagaaa 3435680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 7820476 - 7820424
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||| |||||||| || |||||| |||||||||||||||||||||    
T  7820476 atatataacctgtcattgttatagtagaacataaaagaatttggaagaaacgt 7820424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 42315299 - 42315247
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||| ||||||||||| |||| ||||||||||||| |||||||||    
T  42315299 atatataacctgtcattgttacagtagaatagaaaagaatttgaaagaaacgt 42315247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 34472 - 34735
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||| |               |||||||| |||||||||||||||||||||||    
T  34472 atatataacctgccattgttacagtagaacagaaaagaatttagaagaaac-ttaaaaaaaaataaaatgaatttggaagagtattacaaaatctcaagg 34570  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||    
T  34571 ctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaatctcacaaaatccattactcacaacaat 34670  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  34671 ccattaaaatccgtagagttttgaatatcagcagacaatttttaagttatgcaaaatctcaattg 34735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 45318818 - 45318623
Alignment:
Q  91 gaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 190  Q
    ||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45318818 gaatttggaagagtattacaaaatctcaaggctatgtgtgggtgataaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaa 45318719  T
Q  191 caatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45318718 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 45318623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 52705817 - 52705556
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgtnnnnnnnnnnnnnnntgaatttgaaagagtattacaaaatctcaagg 121  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||||               |||||||| ||||||||||||| |||||||||    
T  52705817 atatataatctgccattgttacagtataacagaaaagaatttggaagaaacgtagaaaaaaaaaa---tgaatttggaagagtattacaatatctcaagg 52705721  T
Q  122 atatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataat 221  Q
     |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||    
T  52705720 ctatgtgtgggagatagaaaagtcttaaggctaggcgtgagattgttagtaagtacattttacaccaaacaatctcacaaaatccattactcacaacaat 52705621  T
Q  222 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52705620 ccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 52705556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 92 - 286
Target Start/End: Original strand, 26882553 - 26882747
Alignment:
Q  92 aatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaac 191  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  26882553 aatttggaagagtattacaaaatctcaaggctatgtgtgggtgatagaaaagtctcaaggctaggtgtgagattgttagtatatacattttacactaaac 26882652  T
Q  192 aatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26882653 aatctcacaaaatccattactcacaacaatccattaaaatctgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 26882747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 36402585 - 36402410
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||| | ||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  36402585 aaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatta 36402486  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||    
T  36402485 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattg 36402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 110 - 286
Target Start/End: Original strand, 1928149 - 1928325
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    |||||||||||  ||||||||||||| | ||||||| ||||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||||    
T  1928149 aaaatctcaagactatgtgtgggagacaaaaaagtcacaaggctaggtgtgagattgttagtagatgcattttacactaaaaagtctcacaaaatccatt 1928248  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| || ||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||| |||||    
T  1928249 actcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattg 1928325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 114 - 286
Target Start/End: Complemental strand, 29209090 - 29208918
Alignment:
Q  114 tctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactc 213  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||| || || |||||||||| | | ||||||||||||||||||    
T  29209090 tctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatatatgttacactaaaaagtctcacaaaatccattactc 29208991  T
Q  214 acaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| ||||||||||||||| ||||  ||||||||||| ||||||||||||||||| || |||||||||||||    
T  29208990 acaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaattg 29208918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 33243060 - 33243231
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||||| ||||||||||||| | |||||||||     |||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||    
T  33243060 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33243155  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||| | ||||||||||||||    
T  33243156 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattg 33243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 33263233 - 33263404
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||||| ||||||||||||| | |||||||||     |||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||    
T  33263233 aaatctcaaggctatgtgtgggagacaaaaaagtctct----taggtgtgagattgttagtaggtacaatttacattaaaaagtttcacaaaatccatta 33263328  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||| ||||||||||||||| || | |||||||||||| ||||||||||||||||| | ||||||||||||||    
T  33263329 ctcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtacaaaatctcaattg 33263404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 10897138 - 10896963
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatta 210  Q
    ||||||||| | |||||||| |||| | |||||| |||||| ||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||    
T  10897138 aaatctcaaagctatgtgtgagagacaaaaaagtgtcaaggttaggtgtgagattgttagtaggtacattttacattaaaatgtttcacaaaatccatta 10897039  T
Q  211 ctcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| || |||||||||||||||    | |||||||||||| |||||||||||||||||  |||||||||||||||    
T  10897038 ctcataacaatccattaaaatcctaccaattttgaataccaatagacaatttttaagttgggcaaaatctcaattg 10896963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 45535089 - 45534991
Alignment:
Q  144 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttt 242  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||| |||||||||    
T  45535089 tctcaaggctacgtgtgagattgttagtaggtacattttacactcaacaatctcaaaaaatccattactcacaacaatccattaaaatcagtagagttt 45534991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 9831867 - 9831782
Alignment:
Q  148 aaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatcc 233  Q
    |||| |||||||||||||||||||| ||| ||||||||||||| | | |||||||||||||||||||||| |||||||||||||||    
T  9831867 aaggttaggtgtgagattgttagtaagtatattttacactaaaaagtctcacaaaatccattactcacaacaatccattaaaatcc 9831782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 45318893 - 45318841
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  45318893 atatataacctgccattgttacagtataacagaaaagaatttggaagaaacgt 45318841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 26882481 - 26882530
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaa 71  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||    
T  26882481 atatataacctgccattgttatagtagaacagaaaagaatttggaagaaa 26882530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 9831499 - 9831453
Alignment:
Q  240 ttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||    
T  9831499 ttttgaataccaatagacaatttgtaagttgtgcaaaatctcaattg 9831453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 45535183 - 45535131
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||| | |||||||||||||  | ||||||||||||||||||||||||||    
T  45535183 atatatatcttgccattgttacaataaaacagaaaagaatttggaagaaacgt 45535131  T

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Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 40410948 - 40410753
Alignment:
Q  91 gaatttgaaagagtattacaaaatctcaaggatatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaa 190  Q
    ||||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40410948 gaatttggaaaagtattacaaaatttcaaggctatgtgtgggagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacactaaa 40410849  T
Q  191 caatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40410848 caatctcacaaaatccattactcacaacaatccattaaaatccgtagagttttgaatacgagtagacaatttttaagttatgcaaaatctcaattg 40410753  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 111 - 286
Target Start/End: Original strand, 6828537 - 6828713
Alignment:
Q  111 aaatctcaaggatatgtgtgggagatagaaaa-gtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccatt 209  Q
    ||||||||| | ||||||||||||| | |||| ||||||||| ||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  6828537 aaatctcaaagctatgtgtgggagacaaaaaaagtctcaaggttagatgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccatt 6828636  T
Q  210 actcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||| || ||||||||||||||| || | ||||||||| || ||||||||||||||||| ||||||||||||||||    
T  6828637 actcataacaatccattaaaatccttacaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattg 6828713  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 17518748 - 17518592
Alignment:
Q  130 gggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaa 229  Q
    |||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| ||| | |||||||||    
T  17518748 gggagacagaaaagtcttgaggctgggtgtgagattgttagtaggtacattttacactaaaaagtctcacaaaatccattactcgcaacattccattaaa 17518649  T
Q  230 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    ||||||||| |||||||| ||| || |||||||||||||| |||||||||| |||||    
T  17518648 atccgtagaattttgaatcccaataaacaatttttaagttgtgcaaaatcttaattg 17518592  T

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Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 10571430 - 10571274
Alignment:
Q  130 gggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaa 229  Q
    |||||| |||||||||| |||| |||||||||||||||||||| |||||||||| |||||| | |||||||||||||||| || |||| |||| ||||||    
T  10571430 gggagacagaaaagtcttaaggttaggtgtgagattgttagtatgtacattttatactaaaaagtttcacaaaatccattcctgacaacaatctattaaa 10571331  T
Q  230 atccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
     | | |||| |||||||||||| ||||||||||||||||| | |||||||| |||||    
T  10571330 tttcatagaattttgaataccaatagacaatttttaagttgtacaaaatcttaattg 10571274  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 3604127 - 3604179
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  3604127 atatataacctgccattgctacagtagaacaaaaaagaatttggaagaaacgt 3604179  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 13950454 - 13950506
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||| ||||||||||||||| |||||||||||||||||| |||||||||    
T  13950454 atatataatctgccattgttacagtagaacagaaaagaatttgaaagaaacgt 13950506  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 40411021 - 40410969
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  40411021 atatataacctgtcattgttacagtagaatagaaaagaatttggaagaaacgt 40410969  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 2276025 - 2276101
Alignment:
Q  185 actaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatt 261  Q
    |||||| ||| |||||||||||||||  || || ||||||||||||||  |||| ||||||||| || |||||||||    
T  2276025 actaaaaaatctcacaaaatccattatacaaaagaatccattaaaatctatagacttttgaatatcaatagacaatt 2276101  T

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Target: scaffold0237 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 21192 - 21334
Alignment:
Q  144 tctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatccattactcacaataatccattaaaatccgtagagtttt 243  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  21192 tctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctcataaaatccattactcacaacaatccattaaaatccgtagagtttt 21291  T
Q  244 gaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  21292 gaataccgatagacaatttttaagttatgcaaaatctcaattg 21334  T

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Target: scaffold0237; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 21102 - 21154
Alignment:
Q  22 atatataacctgccattgttacaggagaacagaaaagaatttggaagaaacgt 74  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  21102 atatatatcctgccattgttacagtagaacagaaaagaatttggaagaaacgt 21154  T

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Target: scaffold0202 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 16303 - 16411
Alignment:
Q  110 aaaatctcaaggatatgtgtgggagatagaaaagtctcaaggcta--ggtgtgagattgttagtaggtacattttacactaaacaatttcacaaaatcca 207  Q
    ||||| |||||| |||||||| |||| | ||||||||||||| ||  |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  16303 aaaatttcaaggctatgtgtgagagacataaaagtctcaaggttataggtgtgagattgttagtaggtacactttacactaaacaatctcacaaaatcca 16402  T
Q  208 ttactcaca 216  Q
    |||||||||    
T  16403 ttactcaca 16411  T

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Target: scaffold0202; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 16412 - 16463
Alignment:
Q  235 tagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattg 286  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||||||    
T  16412 tagaattttgaatactaatagacaatttttaagttatgcaaaatctcaattg 16463  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 1716 - 1789
Alignment:
Q  196 tcacaaaatccattactcacaataatccattaaaatccgtagagttttgaataccagtagacaatttttaagtt 269  Q
    ||||||||||||||   || || |||||||||||||| | ||| |||||||||||| |||||| ||| ||||||    
T  1716 tcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagtt 1789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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