View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19832_high_1 (Length: 525)

Name: NF19832_high_1
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19832_high_1
NF19832_high_1
[»] chr3 (2 HSPs)
chr3 (89-525)||(54005515-54005934)
chr3 (20-50)||(54005973-54006003)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 89 - 525
Target Start/End: Complemental strand, 54005934 - 54005515
Alignment:
Q  89 ggactgctgaattcttaaaagcataattgatgtatcaaatctacttttaactttttataagcttcattgagttgtgtcatgactttgggaacccttgttt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54005934 ggactgctgaattcttaaaagcataattgatgtatcaaatctacttttaactttttataagcttcattgagttgtgtcatgactttgggaacccttgttt 54005835  T
Q  189 ttcccagccagatgatttgctttcatcaaagattcaaagtttatgtccaacaattgcgggaaatgtttgctgtacaggagctcagtttgacacattaagg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54005834 ttcccagccagatgatttgctttcatcaaagattcaaagtttatgtccaacaattacgggaaatgtttgctgtacaggagctcagtttgacacattaagg 54005735  T
Q  289 acgcaagtgcaacaggtattattatcaaattttgtataattgatgcatatattcacaccatgggcttataattgagttcaccatggacttgagttcacca 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  54005734 acgcaagtgcaacaggtattattatcaaattttgtataattgatgcatatattcacaccatgggcttataattgagttcaccatg--------------- 54005650  T
Q  389 tggactaatcatatttatcttcattcagtattactggcttttataaattaagctgatatgcgttaatactttgaacgttttattctggcaggcaattcct 488  Q
      |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54005649 --gactaatcatatttatcttcattcagtattactggcttttataaatcaagctgatatgcgttaatacattgaacgttttattctggcaggcaattcct 54005552  T
Q  489 tttcttgtaggttgtccagcatgcttaagaaactttc 525  Q
    |||||||||||||||||||||||||||||||||||||    
T  54005551 tttcttgtaggttgtccagcatgcttaagaaactttc 54005515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 54006003 - 54005973
Alignment:
Q  20 ctgtgaaggtatatttgattgtcacaatgaa 50  Q
    |||||||||||||||||||||||||||||||    
T  54006003 ctgtgaaggtatatttgattgtcacaatgaa 54005973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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