View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19832_high_2 (Length: 380)
Name: NF19832_high_2
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19832_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 100 - 363
Target Start/End: Original strand, 22985396 - 22985659
Alignment:
| Q |
100 |
ttaagtgatcaaaaatgtaattcaacctttagtttaaatcttattactggttttattttgaacgtgtaaaatatataataaagtaaataacgagcatgca |
199 |
Q |
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| T |
22985396 |
ttaagtgatcaaaaatgtaattcaacctttagtttaaatcttattactggttttattttgaacgtgtaaaatatataataaagtaaataacaggcatgca |
22985495 |
T |
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| Q |
200 |
taagaagaagccaaataaacctgaaagaaaccccattctctgcatgcatggtcgaaattttccagctcaattgtatcattagacaacaatttatgcagat |
299 |
Q |
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| T |
22985496 |
taagaataagccagataaacctgaaagaaaccccattctctgcaggcatggtcgaaattttccagctcaattgtatcattagacaacaatttatgcagat |
22985595 |
T |
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| Q |
300 |
cgattaccggaacttttggtaaagaagttgtgttacatactacaacaaggtcttgattcggttg |
363 |
Q |
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| T |
22985596 |
tgattaccggaacttttggtaaagaagttgtgttacatacaacaacaaggtcttgattcggttg |
22985659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 21348083 - 21347966
Alignment:
| Q |
217 |
aacctgaaagaaaccccattctctgcatgcatggtcgaaattttccagctcaattgtatcattagacaacaatttatgcagatcgattaccggaactttt |
316 |
Q |
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| T |
21348083 |
aacctgaaagaaaccccagcctctgcaagcatggtcaaaattttgtagctcagttgcatcatcagacaacaatttatgcaggtcgataacaggaacttgt |
21347984 |
T |
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| Q |
317 |
ggtaaagaagttgtgtta |
334 |
Q |
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| T |
21347983 |
ggtaaagagcttgtgtta |
21347966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 22932337 - 22932220
Alignment:
| Q |
217 |
aacctgaaagaaaccccattctctgcatgcatggtcgaaattttccagctcaattgtatcattagacaacaatttatgcagatcgattaccggaactttt |
316 |
Q |
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|||||| ||||||||||||||| |||||| ||||||| ||||| |||||| || ||||| |||||||||||||||||| || || | ||||| | | |
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| T |
22932337 |
aacctggaagaaaccccattctttgcatgtttggtcgagcttttctagctcagctgaatcatcagacaacaatttatgcaggtcaataataggaacatgt |
22932238 |
T |
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| Q |
317 |
ggtaaagaagttgtgtta |
334 |
Q |
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|||||||||||||||||| |
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| T |
22932237 |
ggtaaagaagttgtgtta |
22932220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 26915409 - 26915454
Alignment:
| Q |
216 |
aaacctgaaagaaaccccattctctgcatgcatggtcgaaattttc |
261 |
Q |
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| T |
26915409 |
aaacctggaagaaaccccattctttgcatgcatgatcgaatttttc |
26915454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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