View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19832_high_3 (Length: 375)
Name: NF19832_high_3
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19832_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 33893474 - 33893823
Alignment:
| Q |
16 |
acttcatctccaaacaattgctgttaccgcgcagccaacacatgcggcttcaccaatcaacaatgccaatcttcaatggagaaaatttctaagggtggca |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893474 |
acttcatctccaaacaatggctgttaccgcgcagccaacacatgcggcttcaccaatcaacaatgccaatcttcaatggagaaaatttctaagggtggca |
33893573 |
T |
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| Q |
116 |
ggaatgtgtgtgtgtcctcaacatgcacaaagctgtatataccatctttaagccaaagtcattgtcatctatctaccaatcccaaactactcgaccaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893574 |
ggaatgtgtgtgtgtcctcaacatgcacaaagctgtatataccatctttaagccaaagtcattgtcatctatctaccaatcccaaactactcgaccaatg |
33893673 |
T |
|
| Q |
216 |
agcatatgcaaataaggtatgtcaatacaccaactcttctcccctaccattcttcctctcacctcttgggttacatattccagtttattttatagttcga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893674 |
agcatatgcaaataaggtatgtcaatacaccaactcttctcccctaccattcttcctctcacctcttgggttacatattccagtttattttatagttcga |
33893773 |
T |
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| Q |
316 |
gctattctgcattttttgcaaatgccaataggagcttgatgtaccctatg |
365 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
33893774 |
gctattctacattttttgcaaatgccaataggagcttgatgtatcctatg |
33893823 |
T |
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