View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19832_low_13 (Length: 218)

Name: NF19832_low_13
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19832_low_13
NF19832_low_13
[»] chr4 (4 HSPs)
chr4 (1-218)||(53992990-53993207)
chr4 (34-107)||(38159442-38159515)
chr4 (54-111)||(722650-722707)
chr4 (54-111)||(726223-726280)
[»] chr3 (9 HSPs)
chr3 (1-195)||(10496601-10496795)
chr3 (1-195)||(10497508-10497702)
chr3 (30-179)||(20098031-20098179)
chr3 (8-195)||(26140792-26140978)
chr3 (54-111)||(19803290-19803347)
chr3 (54-111)||(19808540-19808597)
chr3 (54-106)||(20008802-20008854)
chr3 (54-106)||(20012622-20012674)
chr3 (148-204)||(35563363-35563419)
[»] chr6 (5 HSPs)
chr6 (8-195)||(33019136-33019324)
chr6 (2-158)||(11091787-11091943)
chr6 (55-196)||(15100932-15101072)
chr6 (54-111)||(26455808-26455865)
chr6 (54-111)||(26459822-26459879)
[»] chr7 (7 HSPs)
chr7 (8-179)||(2458591-2458762)
chr7 (1-104)||(18730754-18730858)
chr7 (54-111)||(15828650-15828707)
chr7 (54-111)||(15835145-15835202)
chr7 (54-111)||(37278877-37278934)
chr7 (54-111)||(37283065-37283122)
chr7 (54-111)||(37973586-37973643)
[»] chr2 (5 HSPs)
chr2 (1-195)||(30558436-30558630)
chr2 (54-111)||(8164678-8164735)
chr2 (54-111)||(8168507-8168564)
chr2 (54-111)||(8997966-8998023)
chr2 (54-111)||(9001890-9001947)
[»] chr8 (3 HSPs)
chr8 (20-116)||(3668794-3668890)
chr8 (54-111)||(5009816-5009873)
chr8 (54-111)||(26908696-26908753)
[»] chr1 (4 HSPs)
chr1 (1-98)||(43761014-43761111)
chr1 (54-195)||(5505404-5505545)
chr1 (78-142)||(18620644-18620708)
chr1 (149-193)||(20514240-20514284)
[»] scaffold0830 (1 HSPs)
scaffold0830 (1-115)||(1829-1944)
[»] chr5 (4 HSPs)
chr5 (59-107)||(20817367-20817415)
chr5 (54-111)||(35415562-35415619)
chr5 (54-106)||(12722320-12722372)
chr5 (54-106)||(43041754-43041806)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 53993207 - 53992990
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53993207 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaagctgctttctagaggtttctagaagcagattgaggtggcgccctgaggagggc 53993108  T
Q  101 gcgccttggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttaggttcttaggaatatataaacg 200  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||  |||||||||| |||||||||| ||||| ||||||||||||    
T  53993107 gcgccttggcccttaggagccttatggagggcgctgaggtctctggaagggtctaaaagcctttttggaggtcttttaggtccttagaaatatataaacg 53993008  T
Q  201 gttcaaatagaaataaaa 218  Q
    || |||||||||||||||    
T  53993007 gtccaaatagaaataaaa 53992990  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 38159515 - 38159442
Alignment:
Q  34 aattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcctt 107  Q
    ||||||||||||||||||| ||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||    
T  38159515 aattaggtatttaggctgcgttctagaggcttctagaaacaggttgaggcggtgccctggggagggcgcgcctt 38159442  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 722707 - 722650
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  722707 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 722650  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 726280 - 726223
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  726280 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 726223  T

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Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 10496795 - 10496601
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggc 100  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10496795 tttatgtttacttaggttgtaagtaatagtggcaattaggtatttaggcggctttctagaggtttctagaagcagattgaggcggcaccctgaggagggc 10496696  T
Q  101 gcgccttggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttaggttcttaggaatatat 195  Q
    ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||||||| || ||||||||||    
T  10496695 gcgccttggaccttaagagccttatggagggcgttgaggcctctggaagggtctaaaaacctttctggaggtcttttaggtcctcaggaatatat 10496601  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 10497702 - 10497508
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggc 100  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10497702 tttatgtttacttaggtagtgagtaataggggcaattaggtatttaggaggctttctagaggtttctagaagcagattgaggcggcgccctgaggaggac 10497603  T
Q  101 gcgccttggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttaggttcttaggaatatat 195  Q
    ||  ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||  |||||||||| |||||||||| || ||||||||||    
T  10497602 gcatcttgggccttatgagccttatggagggcgatgaggcctctggaagggtctaaaagcctttttggaggtcttttaggtcctcaggaatatat 10497508  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 20098031 - 20098179
Alignment:
Q  30 gggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcccttaggagccttatggag 129  Q
    ||||||||| ||||||||||||| |||||||||||| |||||  || ||||||| ||||| |  |||||| ||| ||| | |||||||  | ||||||||    
T  20098031 gggcaattatgtatttaggctgccttctagaggttt-tagaaataggttgaggcagcgccttagggagggtgcgtcttaggccttagggcctttatggag 20098129  T
Q  130 ggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttag 179  Q
    |||  | || ||||||| |||||||||||  | |||||||| ||||||||    
T  20098130 ggcactaagtcctttgggagggtctaaaagcccttttggaggtcttttag 20098179  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 26140978 - 26140792
Alignment:
Q  8 ttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcctt 107  Q
    ||||||||||  |||||||   ||| ||||| ||||||||||| | | ||||||||||||||||| |  ||||||||||||||||  ||||||| |||||    
T  26140978 ttacttaggctataagtaacgagggtaattaagtatttaggctacgt-ctagaggtttctagaagaattttgaggcggcgccctgtagagggcgtgcctt 26140880  T
Q  108 ggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttaggttcttaggaatatat 195  Q
     | |||| ||  | ||||||| |||| | || ||||| | |||||| ||||  | |||||||| ||| ||| ||  ||||||||||||    
T  26140879 aggccttggggcctttatggatggcgctaagtcctttaggagggtccaaaagcccttttggaggtctcttaagtctttaggaatatat 26140792  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 19803290 - 19803347
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  19803290 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 19803347  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 19808540 - 19808597
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  19808540 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 19808597  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 20008802 - 20008854
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcct 106  Q
    |||||||||||||||||||| ||   || |||||||||||||||| |||||||    
T  20008802 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcct 20008854  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 20012622 - 20012674
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcct 106  Q
    |||||||||||||||||||| ||   || |||||||||||||||| |||||||    
T  20012622 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcct 20012674  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 35563419 - 35563363
Alignment:
Q  148 agggtctaaaaatctttttggagatcttttaggttcttaggaatatataaacggttc 204  Q
    |||||||||||| | || || |||||||||||||||||| ||||||||  |||||||    
T  35563419 agggtctaaaaacccttctgaagatcttttaggttcttaagaatatattgacggttc 35563363  T

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Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 33019324 - 33019136
Alignment:
Q  8 ttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcctt 107  Q
    |||||||||||||||||||||| || |||||||||||||| | || |||||||||||||||||||||| |||||||  |  ||||  |||||||||||||    
T  33019324 ttacttaggcagtaagtaatagcggtaattaggtatttagacggccttctagaggtttctagaagcagcttgaggcaacatcctggagagggcgcgcctt 33019225  T
Q  108 ggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatc--tttttggagatcttttaggttcttaggaatatat 195  Q
    || |||||||| | || || ||||||||||||||| || ||||||||||||  |  ||||||| | |||||||||||| |||||||||||    
T  33019224 gggccttaggacctttctgaagggcgttgaggcctctgtaagggtctaaaatgcactttttgggg-tcttttaggttcctaggaatatat 33019136  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 11091943 - 11091787
Alignment:
Q  2 ttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcg 101  Q
    ||||| |||||||| ||| |||||||| ||| | ||||||||||||| ||  |||||||| |||||||||||| || ||||||||||| || ||||| ||    
T  11091943 ttatggttacttagacagcaagtaataagggtatttaggtatttagggtgtattctagagatttctagaagcatatagaggcggcgccttggggaggacg 11091844  T
Q  102 cgccttggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaa 158  Q
    | |||||  |||||||  |||| |||||| | ||||||||| ||  |||||||||||    
T  11091843 ctccttgagccttagggcccttctggaggacattgaggcctatgagagggtctaaaa 11091787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 15100932 - 15101072
Alignment:
Q  55 tctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcccttaggagccttatggagggcgttgaggcctttggaagggtct 154  Q
    |||||||| |||||||||| | || ||||||||||||| |||||||||| ||||| |||| ||  | || | ||||||| | || ||| |   |||||||    
T  15100932 tctagagggttctagaagctggttaaggcggcgccctggggagggcgcgtcttgggccttgggtcctttctagagggcgctaagtcctctaagagggtct 15101031  T
Q  155 aaaaatctttttggagatcttttaggttcttaggaatatata 196  Q
     ||| ||||||||||| |||||||||| ||||  ||||||||    
T  15101032 -aaagtctttttggaggtcttttaggtccttataaatatata 15101072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 26455865 - 26455808
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  26455865 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 26455808  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 26459879 - 26459822
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  26459879 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 26459822  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 2458591 - 2458762
Alignment:
Q  8 ttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcctt 107  Q
    ||||||||||||||| ||| ||||| |  || |||||| ||| |||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||    
T  2458591 ttacttaggcagtaaataacaggggtatctaagtatttgggcggctttctagaggttcctagaagcagattgagtcgacgccctggggagggcgcgcctt 2458690  T
Q  108 ggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttag 179  Q
    || ||| |    ||||||||||| || |||||||| |  ||| |||||||| || || ||||| ||||||||    
T  2458691 gggcctcatagcccttatggaggacgatgaggcctctaaaagagtctaaaagtccttctggaggtcttttag 2458762  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 18730858 - 18730754
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaatt-aggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggaggg 99  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||  ||||| |||||| ||||||| | ||| | ||||||     
T  18730858 tttatggttacttaggcagtaagtaataggggtaatttaggtatttaggcggctttctagagccttctaaaagcagcttgaggcagtgccttaaggagga 18730759  T
Q  100 cgcgc 104  Q
    |||||    
T  18730758 cgcgc 18730754  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 15828650 - 15828707
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  15828650 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 15828707  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 15835145 - 15835202
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  15835145 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 15835202  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 37278877 - 37278934
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  37278877 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 37278934  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 37283065 - 37283122
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  37283065 ttctagaggtttctagaagccgaggcagacggcgccctgaggaggacgcgcctaggcc 37283122  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 37973586 - 37973643
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  37973586 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 37973643  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 30558436 - 30558630
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggc 100  Q
    |||||| ||||||||||  ||||||||  ||| ||||| |||||||| | |   |||||||| |||||||||| | |||||| ||| ||||| | ||| |    
T  30558436 tttatggttacttaggctataagtaatgagggtaattatgtatttagaccgagctctagaggcttctagaagctggttgaggtggcaccctgggaaggac 30558535  T
Q  101 gcgccttggcccttaggagccttatggagggcgttgaggcctttggaagggtctaaaaatctttttggagatcttttaggttcttaggaatatat 195  Q
    ||||||||| ||||||   |||| | ||||||||| ||| || |   ||||||||||| || |||||||| |||| |||||||||||||||||||    
T  30558536 gcgccttgggccttagagcccttctagagggcgttaaggtctctaatagggtctaaaagtccttttggaggtcttctaggttcttaggaatatat 30558630  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 8164735 - 8164678
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  8164735 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 8164678  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 8168564 - 8168507
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  8168564 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 8168507  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 8998023 - 8997966
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  8998023 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 8997966  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 9001947 - 9001890
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  9001947 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 9001890  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 3668794 - 3668890
Alignment:
Q  20 taagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcccttag 116  Q
    ||||||||| ||  ||| ||||||||||||    ||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||    
T  3668794 taagtaataaggttaataaggtatttaggcctacttctagaggcttctagaagtagattgaggcgacgccctgaggagggcgcgccctgggccttag 3668890  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 5009816 - 5009873
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  5009816 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 5009873  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 26908696 - 26908753
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  26908696 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 26908753  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 43761111 - 43761014
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagcagattgaggcggcgccctgaggagg 98  Q
    |||||| |||||||||||  |||||||| ||  ||||||||| |||||  || ||||||||| |||||||||||| ||||||||||  ||||||||||    
T  43761111 tttatgattacttaggcaacaagtaatatggttaattaggtaattaggtggcattctagaggcttctagaagcagtttgaggcggcttcctgaggagg 43761014  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 5505545 - 5505404
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcccttaggagcctt-atggagggcgttgaggcctttggaagggt 152  Q
    ||||||||| |||||||||||| |||||||||||||| | ||||| |||||| ||| |||||| |||||| || |||| || | || ||| | | |||||    
T  5505545 ttctagaggcttctagaagcaggttgaggcggcgcccaggggaggacgcgccatgggccttag-agcctttatagaggacggtaagtcctcttggagggt 5505447  T
Q  153 ctaaaaatctttttggagatcttttaggttcttaggaatatat 195  Q
    ||||||  | ||||| || |||||||||| |||||||| ||||    
T  5505446 ctaaaagcccttttgaaggtcttttaggtgcttaggaagatat 5505404  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 18620644 - 18620708
Alignment:
Q  78 tgaggcggcgccctgaggagggcgcgccttggcccttaggagcc-ttatggagggcgttgaggcct 142  Q
    |||||||||||||| || |||||||||||||| ||||| ||||| || ||||||||||| ||||||    
T  18620644 tgaggcggcgccctaagaagggcgcgccttgggcctta-gagcctttttggagggcgttaaggcct 18620708  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 20514284 - 20514240
Alignment:
Q  149 gggtctaaaaatctttttggagatcttttaggttcttaggaatat 193  Q
    |||||||||| || |||||||| |||||||||| |||||||||||    
T  20514284 gggtctaaaagtccttttggaggtcttttaggtccttaggaatat 20514240  T

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Target: scaffold0830 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1944 - 1829
Alignment:
Q  1 tttatgtttacttaggcagtaagtaataggggcaattaggtatttaggctgctttctagaggtttctagaagc-agattgaggcggcgccctgagga-gg 98  Q
    |||||| ||||||| ||||||||||||||||| | ||| |||||||||| |   |||||||| |||||||||| ||||| ||||||| |||| |||| ||    
T  1944 tttatgattacttaagcagtaagtaataggggtatttatgtatttaggccgagctctagaggcttctagaagctagattaaggcggcaccct-aggaggg 1846  T
Q  99 gcgcgccttggccctta 115  Q
    ||| ||||||| |||||    
T  1845 gcgtgccttgggcctta 1829  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 20817415 - 20817367
Alignment:
Q  59 gaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcctt 107  Q
    |||| |||||||||||| ||||||||||||||| |||||||||| ||||    
T  20817415 gaggcttctagaagcagcttgaggcggcgccctaaggagggcgcacctt 20817367  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 35415619 - 35415562
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgccttggcc 111  Q
    |||||||||||||||||||| ||   || |||||||||||||||| ||||||| ||||    
T  35415619 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcctaggcc 35415562  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 12722372 - 12722320
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcct 106  Q
    ||||||||||||||||||| |  | ||||||||||||||  ||||||||||||    
T  12722372 ttctagaggtttctagaaggaagtagaggcggcgccctggagagggcgcgcct 12722320  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 43041806 - 43041754
Alignment:
Q  54 ttctagaggtttctagaagcagattgaggcggcgccctgaggagggcgcgcct 106  Q
    |||||||||||||||||||| ||   || |||||||||||||||| |||||||    
T  43041806 ttctagaggtttctagaagccgaggtagacggcgccctgaggaggacgcgcct 43041754  T

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