View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19832_low_14 (Length: 204)
Name: NF19832_low_14
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19832_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 36964757 - 36964577
Alignment:
| Q |
5 |
atggccaccagaagatgctaaatgaattggaaaagagccatatatatatgtcatcactttgaattgtgcagcatttgcatttgtcaagtaataattcaac |
104 |
Q |
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| T |
36964757 |
atggccaccagaagatgctaaatgaattggaaaagagccatatat----gtcatcactttgaattgtgcagcatttgcatatgccaagtaataattcaac |
36964662 |
T |
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| Q |
105 |
accttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttt |
189 |
Q |
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| T |
36964661 |
accttcaaggtaacctatagatactgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttt |
36964577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 61 - 177
Target Start/End: Complemental strand, 36947144 - 36947028
Alignment:
| Q |
61 |
ctttgaattgtgcagcatttgcatttgtcaagtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgt |
160 |
Q |
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| T |
36947144 |
ctttgaattgtgcagcatttgcatgtgccaagtaataaataaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagccttccatctttgt |
36947045 |
T |
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| Q |
161 |
cccttaaatggatccaa |
177 |
Q |
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| T |
36947044 |
cccttaaatggatccaa |
36947028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 37070862 - 37070981
Alignment:
| Q |
61 |
ctttgaattgtgcagcatttgcatttgtcaagtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgt |
160 |
Q |
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| T |
37070862 |
ctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgctgcataatgaagtggaagcctttcatatgtgt |
37070961 |
T |
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| Q |
161 |
cccttaaatggatccaagtt |
180 |
Q |
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| T |
37070962 |
ccgttgaatgtatccaagtt |
37070981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 36953538 - 36953450
Alignment:
| Q |
101 |
caacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagttcgtttgttt |
189 |
Q |
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| T |
36953538 |
caacgccttcaaggtaacctatagtcgatgcgtaatgaagaggaagcatttcatgtttgtccattgaatggatctaagttggcttgttt |
36953450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 37080735 - 37080814
Alignment:
| Q |
101 |
caacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgtcccttaaatggatccaagtt |
180 |
Q |
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| T |
37080735 |
caacacctacaaggtaacctatagatgctgcataatgaagtggaagccttttatatgtgtctgttaaatgtatccaagtt |
37080814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 12494668 - 12494796
Alignment:
| Q |
61 |
ctttgaattgtgcagcatttgcatttgtcaagtaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaagtcttccatgtttgt |
160 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
12494668 |
ctttgaattgtgcagcatttgcatttgtcaattaataattcaacaccttcaaggtaacctatagatgctgcgtaatgaagtggaagcctttcatgtttgt |
12494767 |
T |
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| Q |
161 |
cccttaaatggatccaagttcgtttgttt |
189 |
Q |
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| T |
12494768 |
cccttgaatggacccaagttggtttgttt |
12494796 |
T |
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