View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19832_low_4 (Length: 371)

Name: NF19832_low_4
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19832_low_4
NF19832_low_4
[»] chr5 (2 HSPs)
chr5 (11-210)||(18043253-18043454)
chr5 (221-274)||(18037172-18037225)
[»] chr7 (2 HSPs)
chr7 (9-157)||(38459989-38460139)
chr7 (76-256)||(38462334-38462518)
[»] chr3 (3 HSPs)
chr3 (78-225)||(33962650-33962797)
chr3 (16-89)||(6847656-6847730)
chr3 (137-257)||(22971527-22971645)
[»] chr1 (2 HSPs)
chr1 (78-240)||(1599819-1599981)
chr1 (16-89)||(47805085-47805159)
[»] chr2 (2 HSPs)
chr2 (78-254)||(32225425-32225604)
chr2 (16-89)||(21264513-21264587)
[»] scaffold0043 (1 HSPs)
scaffold0043 (78-256)||(55488-55669)
[»] chr6 (1 HSPs)
chr6 (26-93)||(522493-522561)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 18043454 - 18043253
Alignment:
Q  11 cagagacttttacaactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgagctgtccgttacaagattgta 109  Q
    |||||||||||||||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18043454 cagagacttttacaactcacttgataagttgggcattcaagatctctgtgcaccaacttgaggggaagtgttggtgtgagctgtccgttacaagattgta 18043355  T
Q  110 ggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatggttttgcatgtatatataacctattcctctat 208  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  18043354 ggagatattttaggagatatagttggttattattaatcactctgttttttggttatattagaaatatggtttggcatgtatatataacctattcctctat 18043255  T
Q  209 tg 210  Q
    ||    
T  18043254 tg 18043253  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 18037225 - 18037172
Alignment:
Q  221 tgaaagaataagaaataattgtatatcagtttgacaatagcctcaagaatcctg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18037225 tgaaagaataagaaataattgtatatcagtttgacaatagcctcgagaatcctg 18037172  T

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Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 38460139 - 38459989
Alignment:
Q  9 agcagagacttttacaactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgagctgtccgttacaagattg 107  Q
    ||||||||||| | ||||||||||||||||||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  38460139 agcagagacttcttcaactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgttggtgtgagctgtcctttacaagattg 38460040  T
Q  108 taggagatattttaggagatatag-tagttattattaatcactctgttttt 157  Q
    ||||||||||||| |||||||||| |||| ||||||||| |||| ||||||    
T  38460039 taggagatatttttggagatatagttagtaattattaattactccgttttt 38459989  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 256
Target Start/End: Complemental strand, 38462518 - 38462334
Alignment:
Q  76 agtgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaata 174  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||| |||| | ||||||||||| |||||||||    
T  38462518 agtgttggtgtgagctgtcctttacaagattgtaggagatatttttggagatatagttagtaattattaattactccg-tttttggttatattagaaata 38462420  T
Q  175 tggttttgcatgtatatataacc-tattcctctattgtaacattaactgaa---agaataagaaataattgtatatcagtttgaca 256  Q
    | |||||  |||||||||||||| ||||| |||  |||||||||||| |||   ||||| ||||||| |  |||||||||||||||    
T  38462419 ttgttttagatgtatatataaccttattcatcttctgtaacattaaccgaaaatagaatgagaaatactgatatatcagtttgaca 38462334  T

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Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 33962650 - 33962797
Alignment:
Q  78 tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg 176  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| | ||||||||||| ||||||||||     
T  33962650 tgttggtgtgagctgtcctttacaagattgtaggagatattttaggagatatagttagtaattattaattactccg-tttttggttatattagaaatatt 33962748  T
Q  177 gttttgcatgtatatataacctattcctctattgtaacattaactgaaa 225  Q
    ||||| ||||||||||||||||||||||||  ||||||||  |||||||    
T  33962749 gttttacatgtatatataacctattcctcttctgtaacatgtactgaaa 33962797  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 6847656 - 6847730
Alignment:
Q  16 acttttacaactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgag 89  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||||| || ||||| |||||    
T  6847656 actttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagcgttggcgtgag 6847730  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 257
Target Start/End: Original strand, 22971527 - 22971645
Alignment:
Q  137 attattaatcactctgttttttggttatcttagaaatatggttttgcatgtatatataacctattcctctattgtaacattaactgaaagaataagaaat 236  Q
    ||||||||| ||||| ||||| | |||| ||||||||| |||||| | ||||||||| ||  || ||||  |||||| ||| || |||| ||||||||||    
T  22971527 attattaattactctatttttag-ttatattagaaatagggttttacgtgtatatatgacagatgcctcc-ttgtaagattgacagaaataataagaaat 22971624  T
Q  237 aattgtatatcagtttgacaa 257  Q
    |||  ||||||||||| ||||    
T  22971625 aatcttatatcagtttcacaa 22971645  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 1599981 - 1599819
Alignment:
Q  78 tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg 176  Q
    |||||||| || |||||| |||||||| |||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| |||  ||||| |||||    
T  1599981 tgttggtgagaactgtcctttacaagactgtaggagatattttaggagatatagttagtaattattaattactc-gttttttgttta--ttagagatatg 1599885  T
Q  177 gttttgcatgtatatataacctattcctctattgtaacattaactgaa--agaataagaaataatt 240  Q
    |||||  |||||||||||||||||||||||  ||||||||||||| ||  ||||| ||||||||||    
T  1599884 gttttatatgtatatataacctattcctcttctgtaacattaactaaaatagaatgagaaataatt 1599819  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 47805085 - 47805159
Alignment:
Q  16 acttttacaactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgag 89  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||||| |||||||| |||||    
T  47805085 actttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag 47805159  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 254
Target Start/End: Complemental strand, 32225604 - 32225425
Alignment:
Q  78 tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg 176  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  ||||||||| |||| ||||||||| |||| | ||||||||||| || |||||||     
T  32225604 tgttggtgtgagctgtcctttacacgattgtaggagatatttttagagatatagttagtaattattaattactccg-tttttggttatatttgaaatatt 32225506  T
Q  177 gttttgcatgtatatataacc-tattcctctattgtaacattaactgaa--agaataagaaataattgtatatcagtttga 254  Q
    |||||  |||||||||||||| | |||||||  ||||||||||||||||  ||||| ||||||| |  |||||||||||||    
T  32225505 gttttagatgtatatataaccttgttcctcttctgtaacattaactgaaatagaatgagaaatattgatatatcagtttga 32225425  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 21264513 - 21264587
Alignment:
Q  16 acttttacaactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgag 89  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||||| |||||||| |||||    
T  21264513 actttttcaactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag 21264587  T

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Target: scaffold0043 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 256
Target Start/End: Original strand, 55488 - 55669
Alignment:
Q  78 tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg 176  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||  |||||| ||||| ||||||| |||    
T  55488 tgttggtgtgagctgtcctttacaagattgtagaagatattttaggagatatagttagtaattattaattactccctttttt-gttatattagaaacatg 55586  T
Q  177 gttttgcatgtatatataaccta-ttcctctattgtaacattaa--ctgaaagaataagaaataattgtatatcagtttgaca 256  Q
    ||||| ||||||||||| ||  | |||||||  ||||||||| |    |||||||| |||||| || ||||||||||||||||    
T  55587 gttttacatgtatatattactgatttcctcttctgtaacattgatcgagaaagaatgagaaattatggtatatcagtttgaca 55669  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 522561 - 522493
Alignment:
Q  26 ctcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgagctgt 93  Q
    ||||||||||||||| ||||||   ||| | | ||||||||||||||||| ||||||||||||||||||    
T  522561 ctcacttgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgttggtgtgagctgt 522493  T

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