View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19832_low_9 (Length: 295)
Name: NF19832_low_9
Description: NF19832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19832_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8954876 - 8954654
Alignment:
| Q |
1 |
aactctgatgtgaaactacctttacttcccctactcctgcggcggtgcaaatggcgtgtagaattgtttttcggtacttcatggcttcctttctccgttg |
100 |
Q |
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| T |
8954876 |
aactctgatgtgaaactacctttacttcccctactcctgcggcggtgcaaatggtgtgtagaattgtttttcggtacttcatggcttcctttctccgttg |
8954777 |
T |
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| Q |
101 |
aacttgctttgtgagagtaagtatgagaaggtttcacttcatcaacattaacatgtttgttgaagatctctggattttccattggatcattcggatttat |
200 |
Q |
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| T |
8954776 |
aacttgctttgtgagagtaagtatgagaaggtttcacttcatcaacattaacatgtttgttgaagatctctggattttccattggattgttcggatttat |
8954677 |
T |
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| Q |
201 |
tatgaatccggccttttccctgc |
223 |
Q |
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| T |
8954676 |
tatgaatccggccttttctctgc |
8954654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 4880130 - 4880063
Alignment:
| Q |
219 |
cctgcttgaacctctaaatcatgcatctaaatttttcaaaaacgttgtatctagctgtcaagaataat |
286 |
Q |
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| T |
4880130 |
cctgcttgaacctctaaatcatgtatctaaattttccaaaatcgttgcatctagctgtcaagtataat |
4880063 |
T |
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