View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_high_3 (Length: 394)
Name: NF19833_high_3
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 393732 - 394097
Alignment:
| Q |
13 |
aatattgtaattctaaaaactaattaagctatgtttgataagagatattcatttgcacttataacttatcacatgagtgacatgactaaaaaatactcat |
112 |
Q |
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| T |
393732 |
aatattgtaattctaaaaactaattaagctatgtttgataagagatattcatttgcacttataacttatcacatgagtgacatgactaaaaaatactcat |
393831 |
T |
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| Q |
113 |
ttgataattatcatttactcaagagcttatagcttattttatcttagtgaacttatagtgtttttataagctaaatcaagttgtttatagtttaaagatt |
212 |
Q |
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| T |
393832 |
ttgataattatcatttactcaagagcttatagcttatcttatcttagtgaacttatagtgtttttataagctaaatcaagttgtttatagtttaaagatt |
393931 |
T |
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| Q |
213 |
aaagtttacaaattcaatcagataattaatcaaatataaaaatcattctaaacgagtttatcaactatcctttctttttggtgcnnnnnnngagcgttga |
312 |
Q |
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| T |
393932 |
aaagtttacaaattcaatcagataattaatcaaatataaaaatcattctaaacgagtttatcaaccatcctttctttttggcgcaaaaacagagcgttga |
394031 |
T |
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| Q |
313 |
gttcattcgctagtgagtgcnnnnnnnnnnnngtgatttcacttttctccttcttcttcagttttt |
378 |
Q |
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| T |
394032 |
gttcattcgctagtgagtgcaaaaacaaaaaagtgatttcacttttctccttcttcttcagttttt |
394097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 32882682 - 32882739
Alignment:
| Q |
95 |
tgactaaaaaatactcatttgataattatcatttactcaagagcttatagcttatttt |
152 |
Q |
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| T |
32882682 |
tgactaaaagagactcgtttggtaattgtcattttctcacgagcttatagcttatttt |
32882739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 3841211 - 3841154
Alignment:
| Q |
95 |
tgactaaaaaatactcatttgataattatcatttactcaagagcttatagcttatttt |
152 |
Q |
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|||||||||||||||| ||||||||| || | || ||| |||| |||||||||||||| |
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| T |
3841211 |
tgactaaaaaatactcgtttgataatcataactttctcgagagtttatagcttatttt |
3841154 |
T |
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