View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_high_6 (Length: 363)
Name: NF19833_high_6
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 37053721 - 37054054
Alignment:
| Q |
9 |
gatatatataaaatagtgtcctaggatctaaaatactgaaccaatgttcgttcagcgctctttgtaatgnnnnnnnnnnnnnnnnnnnnnctaaaccaat |
108 |
Q |
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| T |
37053721 |
gatatatataaaatagtgtcttaggatctaaaatactgaaccaatgtttgttcagcgctatttgtaatgaaaaataaaataaaata----ctaaaccaat |
37053816 |
T |
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| Q |
109 |
agaccttgaaatgcactcaagttgaataacatagaataattaacttgtattttacaatggggtcgtgcaaacttatatacaagggggaattagaaaataa |
208 |
Q |
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| T |
37053817 |
agaccttgaaatgcactgaagttgaataacatagaataattaacttgtattttacaatggggtcgtgcaaacttatatacaagggggaattagaaaataa |
37053916 |
T |
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| Q |
209 |
ggaaactaaatctatcccaataaatagagaataatcaacgcctatgatcattacacaatcacttttacattttttctgcttgtattatgtttatttttct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37053917 |
ggaaactaaatctatcccaataaatagagaataatcaacgcctatgatcattacacaatcacttttacattttttctgcttgtattatgtttattttttt |
37054016 |
T |
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| Q |
309 |
caccgcagaaccaaacacacgttcatgatcatcaaaac |
346 |
Q |
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| T |
37054017 |
caccgcagaaccaaacacacgttcatgatcatcaaaac |
37054054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 36997029 - 36996984
Alignment:
| Q |
202 |
aaaataaggaaactaaatctatcccaataaatagagaataatcaac |
247 |
Q |
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| T |
36997029 |
aaaataaggaaactaaatcaaccataataaatagagaataatcaac |
36996984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 37001109 - 37001064
Alignment:
| Q |
202 |
aaaataaggaaactaaatctatcccaataaatagagaataatcaac |
247 |
Q |
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||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
37001109 |
aaaataaggaaactaaatcaaccataataaatagagaataatcaac |
37001064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 19935540 - 19935585
Alignment:
| Q |
202 |
aaaataaggaaactaaatctatcccaataaatagagaataatcaac |
247 |
Q |
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|||||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
19935540 |
aaaataaggaaattaaatcaatccaaataaatagagaataatcaac |
19935585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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