View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_high_8 (Length: 261)
Name: NF19833_high_8
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 20102716 - 20102943
Alignment:
| Q |
19 |
aaactccaacacactttttacttgattaaattagtttgtagaagtctcttgtgtgattgagccatataagtctctt----gtgtaattgagcaaagaaag |
114 |
Q |
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| T |
20102716 |
aaactccaacacacattttgcttgattaaattagattgtagaagtctcttgtgtgattgagccatataagtctctttctcgtgtaattgagcaaaggaag |
20102815 |
T |
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| Q |
115 |
tctcttatttatgtgtttgagcaacttgtaatcaacgagattatagtagaaatccctctgaagtgcaatggactggactactctcggtttgtagtaggaa |
214 |
Q |
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| T |
20102816 |
tctcttgtttatgtgtttgagcaacttgtaatctatgagattatagtagaaatccctctgaagtgcaatggacaggactatttttggtttgtagtaggaa |
20102915 |
T |
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| Q |
215 |
ccaatataatttccatgttctctctctc |
242 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
20102916 |
ccaatataatttccatgtgctctctctc |
20102943 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 9123989 - 9123935
Alignment:
| Q |
91 |
tcttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaat |
146 |
Q |
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| T |
9123989 |
tcttgtgtaattgagcaaaggaagtctctta-ctatgtgtttgagcaagttgtaat |
9123935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 24110036 - 24110101
Alignment:
| Q |
163 |
gaaatccctctgaagtgcaatgg-actggactactctcggtttgtagtaggaaccaatataatttc |
227 |
Q |
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| T |
24110036 |
gaaatccctaggaagtgcaaggggactggactactcttggtttgtgggaggaaccaatataatttc |
24110101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 42298043 - 42298099
Alignment:
| Q |
91 |
tcttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaatc |
147 |
Q |
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| T |
42298043 |
tcttgtatgattgagcaaaggaagtctcttacttatgtgtttgatcaaattgtaatc |
42298099 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 8501968 - 8501875
Alignment:
| Q |
115 |
tctcttatttatgtgtttgagcaacttgtaatcaac-gagattatagtagaaatccctctgaagtgcaatgga-ctggactactctcggtttgt |
206 |
Q |
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| T |
8501968 |
tctcttacttatgtgtttaagcaaattgtaatctagtgagattatagtaaaaattccttggaagtgcaaggggtctggactactctcggtttgt |
8501875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 26013329 - 26013219
Alignment:
| Q |
112 |
aagtctcttatttatgtgtttgagcaacttgtaatcaacgagattatagtagaaatccctctgaagtgcaatg-gactggactactctcggtttgtagta |
210 |
Q |
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| T |
26013329 |
aagtctcttgtttgtgtgcttgagcat-ttgtaatctatgagattatagt-gaaatcccttgaaagtgcaaggagattggactactcctggtttgtagga |
26013232 |
T |
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| Q |
211 |
ggaaccaatataa |
223 |
Q |
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| T |
26013231 |
ggaaccaatataa |
26013219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 9558698 - 9558783
Alignment:
| Q |
65 |
tcttgtgtgattgagccatataagtct----cttgtgtaattgagcaaagaaagtctcttatttatgtgtttgagcaacttgtaat |
146 |
Q |
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|||||| ||||||||| ||||| |||| ||||||| ||||||||||||||||||| || || |||| |||||||| ||||||| |
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| T |
9558698 |
tcttgtttgattgagcaatataggtctttttcttgtgttattgagcaaagaaagtctcgtacttgtgtgcttgagcaatttgtaat |
9558783 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 21019463 - 21019388
Alignment:
| Q |
151 |
gagattatagtagaaatccctctgaagtgcaatgga-ctggactactctcggtttgtagtaggaaccaatataatt |
225 |
Q |
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| T |
21019463 |
gagattatagttaaaatcccttggaagtacaagggaactgaactactctcggtttgtggaaggaaccaatataatt |
21019388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 20052834 - 20052742
Alignment:
| Q |
131 |
ttgagcaacttgtaatcaacgagattatagtagaaatccctctgaagtgcaatgga-ctggactactctcggtttgtagtaggaaccaatataa |
223 |
Q |
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| T |
20052834 |
ttgagcaagttgtaatctaagtgattatagt-gaaatccctaagaagtgcaagggaactagactactcttgttttgtgggaggaaccaatataa |
20052742 |
T |
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