View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_low_1 (Length: 592)
Name: NF19833_low_1
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Complemental strand, 8509955 - 8509390
Alignment:
| Q |
19 |
ggaatagggtgtggggtatatttcatagttattttacaaatttgatagttgctagtgttcttctatagttctacttctatccaattttaannnnnnnggt |
118 |
Q |
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| T |
8509955 |
ggaatagggtgtggggtatatttcatagttattttacaaatttgatagttgctagtgttcttctatagttctacttctatccaattttaatttttttggt |
8509856 |
T |
|
| Q |
119 |
aaagtatagttctattcaattagcatgtgagtaatttgtaaagatgaatgtaagggatgtatcaagagtagaatgattgagacatgaataggttatccta |
218 |
Q |
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| T |
8509855 |
aaagtatagttctattcaattagcatgtgagtaatttgtaaagatgaatgtaagggatgtatcaagagtagaatgattgagacatgaataggttatccta |
8509756 |
T |
|
| Q |
219 |
aaagtgcaaaattttattgcattacgaaatgcactagcaaacttcacatgtatgtatacatacttttataagtttattaattatgcatgctatatatttt |
318 |
Q |
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| T |
8509755 |
aaagtgcaaaattttattgcattacgaaatgcactagcaaacttcacatgtatgtatacatacttttataagtttattaattatgcatgctatatatttt |
8509656 |
T |
|
| Q |
319 |
atgtcacatccctttcaattacaattcaaggtaagctagattctctttctttttccctctaagaagttaattgacttgaagaataatccctccaaataaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8509655 |
atgtcacatccctttcaattacaattcaaggtaagctagattctctttctttttccctctaagaagttaattgacttgaagaataatccctccaaataaa |
8509556 |
T |
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| Q |
419 |
caaagcattttgagaagtggccatcatcaagttaagggaaaagtatgaaaattagccaccaaatt-ttttcatgcattagttttgcttctttcctatctc |
517 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8509555 |
caaagcattttgagaagtggccatcatcatgttaagggaaaagtatgaaaattagccaccaaatttttttcatgcattagttttgcttctttcctatctc |
8509456 |
T |
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| Q |
518 |
actcacttaacatgtgacctaaaatgtaagtaactgaaattggatgtgtttaaattcttcatctca |
583 |
Q |
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| T |
8509455 |
actcacttaacatgtgacctaaaatgtaagtaactgaaattggatgtgtttaaattcttcatctca |
8509390 |
T |
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