View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19833_low_13 (Length: 249)

Name: NF19833_low_13
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19833_low_13
NF19833_low_13
[»] chr8 (4 HSPs)
chr8 (16-96)||(12464733-12464815)
chr8 (109-170)||(24196566-24196630)
chr8 (99-156)||(30271224-30271280)
chr8 (132-164)||(31514942-31514974)
[»] chr4 (7 HSPs)
chr4 (13-97)||(8777496-8777582)
chr4 (13-97)||(4876301-4876387)
chr4 (14-97)||(21527147-21527232)
chr4 (18-98)||(31189042-31189124)
chr4 (132-168)||(36635418-36635454)
chr4 (134-168)||(941335-941369)
chr4 (132-164)||(12895054-12895086)
[»] scaffold0003 (3 HSPs)
scaffold0003 (14-97)||(17634-17719)
scaffold0003 (14-97)||(31780-31865)
scaffold0003 (14-97)||(37977-38062)
[»] chr7 (5 HSPs)
chr7 (14-97)||(16428921-16429006)
chr7 (132-167)||(29763125-29763160)
chr7 (132-165)||(30813885-30813918)
chr7 (132-168)||(19213881-19213917)
chr7 (132-164)||(43027403-43027435)
[»] chr2 (15 HSPs)
chr2 (13-97)||(7692944-7693030)
chr2 (13-88)||(19793546-19793623)
chr2 (13-97)||(13806893-13806979)
chr2 (14-97)||(35672589-35672674)
chr2 (13-96)||(27095549-27095634)
chr2 (15-98)||(38459419-38459504)
chr2 (13-97)||(8360041-8360127)
chr2 (98-163)||(19536361-19536423)
chr2 (15-60)||(27499621-27499666)
chr2 (104-162)||(18255945-18256000)
chr2 (36-97)||(24318319-24318382)
chr2 (50-98)||(29650899-29650949)
chr2 (98-162)||(34691770-34691831)
chr2 (98-162)||(34714182-34714243)
chr2 (104-163)||(31018629-31018689)
[»] scaffold0884 (1 HSPs)
scaffold0884 (13-98)||(609-696)
[»] chr1 (9 HSPs)
chr1 (13-97)||(6183356-6183442)
chr1 (13-97)||(21876060-21876146)
chr1 (98-163)||(24334664-24334731)
chr1 (104-163)||(41877432-41877490)
chr1 (132-170)||(29144313-29144351)
chr1 (132-163)||(15765846-15765877)
chr1 (132-163)||(34741934-34741965)
chr1 (134-164)||(25361983-25362013)
chr1 (98-130)||(18337362-18337394)
[»] chr6 (8 HSPs)
chr6 (13-94)||(24475333-24475416)
chr6 (14-97)||(27966102-27966186)
chr6 (104-163)||(426478-426534)
chr6 (104-166)||(5732471-5732530)
chr6 (132-163)||(13360313-13360344)
chr6 (132-165)||(7723197-7723230)
chr6 (98-130)||(7977824-7977856)
chr6 (132-164)||(16766796-16766828)
[»] scaffold0014 (1 HSPs)
scaffold0014 (14-97)||(84334-84419)
[»] chr3 (6 HSPs)
chr3 (17-97)||(9010614-9010696)
chr3 (13-94)||(7424178-7424261)
chr3 (13-94)||(39291481-39291564)
chr3 (104-165)||(32400667-32400728)
chr3 (132-165)||(4990910-4990943)
chr3 (132-165)||(55401163-55401196)
[»] chr5 (5 HSPs)
chr5 (16-94)||(31132310-31132390)
chr5 (132-163)||(6770624-6770655)
chr5 (104-163)||(8420066-8420122)
chr5 (98-130)||(21191050-21191082)
chr5 (132-164)||(21576684-21576716)
[»] scaffold0027 (1 HSPs)
scaffold0027 (98-163)||(46715-46776)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 12464733 - 12464815
Alignment:
Q  16 tgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  12464733 tgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 24196630 - 24196566
Alignment:
Q  109 acaagtgtcggtgtcggacacat---cgcctaatccgaagagtgtccgtgcttcatagctcaaca 170  Q
    ||||||||| |||||||||||||   || ||||||  ||||||||||||||||||||||||||||    
T  24196630 acaagtgtcagtgtcggacacatacacgtctaatctaaagagtgtccgtgcttcatagctcaaca 24196566  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 30271280 - 30271224
Alignment:
Q  99 cagtctaattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgc 156  Q
    |||| |||||||||||||||||||||||||| | ||||||  ||| ||||||||||||    
T  30271280 cagtgtaattacaagtgtcggtgtcggacacgt-gcctaactcgaggagtgtccgtgc 30271224  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 31514942 - 31514974
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagc 164  Q
    |||||||||||| ||||||||||||||||||||    
T  31514942 cgcctaatccgaggagtgtccgtgcttcatagc 31514974  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 8777582 - 8777496
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||||    
T  8777582 cagtgtgtatctttctcttcagttattttccgtgctgatgtaaaaactaaaacccccttgatgttaaatctatattttgtagtagtg 8777496  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 4876387 - 4876301
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||| ||||||||||||| | |||||| ||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||    
T  4876387 cagtgtatatctttctcttctgatatttttcgtgctgatgtgaaaactaaaacccgcttgatgttaaatgtatattttgtagtagtg 4876301  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 21527232 - 21527147
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||||||  || || |||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||    
T  21527232 agtgtgtatctttccatttagatattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagtg 21527147  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31189124 - 31189042
Alignment:
Q  18 tgtatctttctcttcagttattttccgtgctgatgtgaaaact-aaaaca-cttgatgttaaatctatattttgtagtagtgt 98  Q
    |||||||||| |||||| |||||||||  |||||||||||| | |||||| | ||||||||||| |||||||| |||||||||    
T  31189124 tgtatctttcccttcaggtattttccgcactgatgtgaaaattaaaaacaccctgatgttaaatttatattttctagtagtgt 31189042  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 36635418 - 36635454
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagctcaa 168  Q
    |||||||||||||||||||||||||||||||| ||||    
T  36635418 cgcctaatccgaagagtgtccgtgcttcatagatcaa 36635454  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 941335 - 941369
Alignment:
Q  134 cctaatccgaagagtgtccgtgcttcatagctcaa 168  Q
    ||||||||||||| |||||||||||||||||||||    
T  941335 cctaatccgaagactgtccgtgcttcatagctcaa 941369  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 12895086 - 12895054
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagc 164  Q
    |||||||| ||||||||||||||||||||||||    
T  12895086 cgcctaattcgaagagtgtccgtgcttcatagc 12895054  T

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Target: scaffold0003 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 17719 - 17634
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  17719 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagtg 17634  T

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Target: scaffold0003; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 31865 - 31780
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  31865 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagtg 31780  T

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Target: scaffold0003; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 38062 - 37977
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  38062 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagtg 37977  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 16429006 - 16428921
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  16429006 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagtg 16428921  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 29763160 - 29763125
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagctca 167  Q
    |||||||||||| |||||||||||||||||||||||    
T  29763160 cgcctaatccgaggagtgtccgtgcttcatagctca 29763125  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 30813885 - 30813918
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagct 165  Q
    |||||||||||| |||||||||||||||||||||    
T  30813885 cgcctaatccgaggagtgtccgtgcttcatagct 30813918  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 19213881 - 19213917
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagctcaa 168  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  19213881 cgcctaatccgaggagtgtccgtgcttcatagttcaa 19213917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 43027435 - 43027403
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagc 164  Q
    |||||||||||| ||||||||||||||||||||    
T  43027435 cgcctaatccgatgagtgtccgtgcttcatagc 43027403  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 7692944 - 7693030
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||  |||||||||||||||||||||||||    
T  7692944 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgtcgttaaatctatattttgtagtagtg 7693030  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 19793546 - 19793623
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatatttt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  19793546 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatatttt 19793623  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 13806893 - 13806979
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||||||| ||| || |||||||| ||||||||||||||||||||  | |||||||||||||||||||||||||||||||    
T  13806893 cagtgtgtatctttccctttagatattttccatgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagtg 13806979  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 35672589 - 35672674
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||    
T  35672589 agtgtgtatctttcccttcagatatttttcgtgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagtg 35672674  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 27095549 - 27095634
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagt 96  Q
    ||||||||||||||| ||| || |||||  ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  27095549 cagtgtgtatctttccctttagatatttctcgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 27095634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 38459419 - 38459504
Alignment:
Q  15 gtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacac--ttgatgttaaatctatattttgtagtagtgt 98  Q
    ||||||||||||  | |||| ||||||||||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||    
T  38459419 gtgtgtatcttttccatcagatattttccgtgctgatgtgaaaattaaaaccccattgatgttaaatctatattttgtagtagtgt 38459504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 8360041 - 8360127
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||| |||  |||||| |||||| ||||||||||||||||||||||  | | ||||||||||| |||||||||||||||||    
T  8360041 cagtgtgtatattttccttcagatatttttcgtgctgatgtgaaaactaaaacccccatgatgttaaatgtatattttgtagtagtg 8360127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 19536423 - 19536361
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||| |||||||||||||||||||||||||   |||||||||||| |||||||| ||||||||||    
T  19536423 tcagtgtaattacaagtgtcggtgtcggaca---cgcctaatccgaggagtgtccatgcttcatag 19536361  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 27499621 - 27499666
Alignment:
Q  15 gtgtgtatctttctcttcagttattttccgtgctgatgtgaaaact 60  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||    
T  27499621 gtgtgtatctttctcatcaggtatttttcgtgctgatgtgaaaact 27499666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 18256000 - 18255945
Alignment:
Q  104 taattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcata 162  Q
    |||||| |||||||||||||||||||   ||||||||| | ||||||||||||||||||    
T  18256000 taattagaagtgtcggtgtcggacac---gcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24318382 - 24318319
Alignment:
Q  36 tattttccgtgctgatgtgaaaactaaaacac--ttgatgttaaatctatattttgtagtagtg 97  Q
    |||||| ||||||||||||||||||||||| |   |||||| |||| |||||||||||||||||    
T  24318382 tatttttcgtgctgatgtgaaaactaaaacccctatgatgtgaaatgtatattttgtagtagtg 24318319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 29650899 - 29650949
Alignment:
Q  50 atgtgaaaactaaaacac--ttgatgttaaatctatattttgtagtagtgt 98  Q
    |||||||||||||||| |  |||||||||||| ||||||||||||||||||    
T  29650899 atgtgaaaactaaaacccccttgatgttaaatatatattttgtagtagtgt 29650949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 34691831 - 34691770
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcata 162  Q
    ||||| |||||| | |||||||||||||||||   ||||||||||| ||||||||||| ||||||    
T  34691831 tcagtgtaattatatgtgtcggtgtcggacac---gcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 34714243 - 34714182
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcata 162  Q
    ||||| |||||| | |||||||||||||||||   ||||||||||| ||||||||||| ||||||    
T  34714243 tcagtgtaattatatgtgtcggtgtcggacac---gcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 31018629 - 31018689
Alignment:
Q  104 taattacaagtgtcggtgtcggacacat-cgcctaatccgaagagtgtccgtgcttcatag 163  Q
    |||||| | ||||||||||||||||| | || ||||||||| ||||||| |||||||||||    
T  31018629 taattataggtgtcggtgtcggacacgtgcgtctaatccgaggagtgtcagtgcttcatag 31018689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 609 - 696
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacac--ttgatgttaaatctatattttgtagtagtgt 98  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  609 cagtgtgtatctttcccttcaggtatttttcgtgctgatgtgaaaactaaaacacctttgatgttaaatgtatattttgtagtagtgt 696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 6183442 - 6183356
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaaca--cttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||   |||||||||||| |||||||||||||||||    
T  6183442 cagtgtgtatctttcccttcaggtatttttcgtgctgatgtgaaaactaaaacagctttgatgttaaatgtatattttgtagtagtg 6183356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 21876060 - 21876146
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaa--acacttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||   | ||||||||||||| |||||||||||||||||    
T  21876060 cagtgtgtatctttcccttcagatattttccgtgctgatgtgaaaactaaaccccccttgatgttaaatgtatattttgtagtagtg 21876146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 24334731 - 24334664
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacacat--cgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||| |||||||||||||||||||||||||| |  |||||||||| |  ||||||||||||||||||    
T  24334731 tcagtgtaattacaagtgtcggtgtcggacacgtcacgcctaatccaagtagtgtccgtgcttcatag 24334664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 41877490 - 41877432
Alignment:
Q  104 taattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatag 163  Q
    |||||||||||||||||||||||||| | |||||| |||| ||||| |||||||||||||    
T  41877490 taattacaagtgtcggtgtcggacacgt-gcctaacccgaggagtggccgtgcttcatag 41877432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 29144351 - 29144313
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagctcaaca 170  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29144351 cgcctaatccgaagagtgtccgtgcttcataggtcaaca 29144313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 15765846 - 15765877
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||||||||||||||||||||||||||||||    
T  15765846 cgcctaatccgaagagtgtccgtgcttcatag 15765877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 34741934 - 34741965
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||||||||||||||||||||||||||||||    
T  34741934 cgcctaatccgaagagtgtccgtgcttcatag 34741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 25361983 - 25362013
Alignment:
Q  134 cctaatccgaagagtgtccgtgcttcatagc 164  Q
    |||||||||||||||||||||||||||||||    
T  25361983 cctaatccgaagagtgtccgtgcttcatagc 25362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 18337362 - 18337394
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacaca 130  Q
    ||||| |||||||||||||||||||||||||||    
T  18337362 tcagtgtaattacaagtgtcggtgtcggacaca 18337394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 24475416 - 24475333
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagta 94  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||  | ||||||||||||| ||||||| ||||||    
T  24475416 cagtgtgtatctttctcttcagatattttccgtgctgatgtaaaaactaaaacccccttgatgttaaatgtatatttggtagta 24475333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 27966186 - 27966102
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacac--ttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| |||||| | |||||| ||||||||||||||||||||| |  ||||||||| || |||||||||||||||||    
T  27966186 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttatatgtatattttgtagtagtg 27966102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 426534 - 426478
Alignment:
Q  104 taattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatag 163  Q
    |||||||||||||||||||||||||   ||||||||| || |||||||||||||||||||    
T  426534 taattacaagtgtcggtgtcggaca---cgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 5732530 - 5732471
Alignment:
Q  104 taattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatagctc 166  Q
    |||||| | |||||||||||||||||   ||||||||||| |||||||| |||||||||||||    
T  5732530 taattatatgtgtcggtgtcggacac---gcctaatccgaggagtgtccatgcttcatagctc 5732471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 13360344 - 13360313
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||||||||||||||||||||||||||||||    
T  13360344 cgcctaatccgaagagtgtccgtgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 7723230 - 7723197
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagct 165  Q
    |||||||||||| |||||||||||||||||||||    
T  7723230 cgcctaatccgaggagtgtccgtgcttcatagct 7723197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 7977856 - 7977824
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacaca 130  Q
    ||||| |||||||||||||||||||||||||||    
T  7977856 tcagtgtaattacaagtgtcggtgtcggacaca 7977824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 16766796 - 16766828
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagc 164  Q
    ||||||||||||||| |||||||||||||||||    
T  16766796 cgcctaatccgaagaatgtccgtgcttcatagc 16766828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 84419 - 84334
Alignment:
Q  14 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacac--ttgatgttaaatctatattttgtagtagtg 97  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||| |   ||||||||||| |||||||| ||||||||    
T  84419 agtgtgtatctttcccttcagatattttccgtgctgatgtgaaaactaaaacccctatgatgttaaatgtatattttatagtagtg 84334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 9010614 - 9010696
Alignment:
Q  17 gtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaaca--cttgatgttaaatctatattttgtagtagtg 97  Q
    ||||||||||| |||||  |||||| |||| |||||||||||||||||||  ||| ||||||||| |||||||||||||||||    
T  9010614 gtgtatctttcccttcaaatatttttcgtgttgatgtgaaaactaaaacatccttaatgttaaatgtatattttgtagtagtg 9010696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 7424178 - 7424261
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacact--tgatgttaaatctatattttgtagta 94  Q
    ||||||||||||||   ||||| |||||| ||||||||||||||||||||||| ||  |||||||| || ||||||||||||||    
T  7424178 cagtgtgtatcttttctttcagatatttttcgtgctgatgtgaaaactaaaaccctcgtgatgttagatgtatattttgtagta 7424261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 39291564 - 39291481
Alignment:
Q  13 cagtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaa--cacttgatgttaaatctatattttgtagta 94  Q
    ||||||||||||||  ||||||  ||||| |||||||||||||||||| |||  | | ||||||||||| ||||||||||||||    
T  39291564 cagtgtgtatcttttccttcagaaatttttcgtgctgatgtgaaaactgaaacccccgtgatgttaaatgtatattttgtagta 39291481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 32400728 - 32400667
Alignment:
Q  104 taattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatagct 165  Q
    |||||||||||||| ||||||||||| | |||||| || | |||||||| ||||||||||||    
T  32400728 taattacaagtgtccgtgtcggacacgttgcctaacccaaggagtgtccttgcttcatagct 32400667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 4990943 - 4990910
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagct 165  Q
    |||||||||||| |||||||||||||||||||||    
T  4990943 cgcctaatccgaggagtgtccgtgcttcatagct 4990910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 55401163 - 55401196
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagct 165  Q
    |||||||||||| |||||||||||||||||||||    
T  55401163 cgcctaatccgaggagtgtccgtgcttcatagct 55401196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 31132310 - 31132390
Alignment:
Q  16 tgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacac--ttgatgttaaatctatattttgtagta 94  Q
    |||||||||||| |||||| |||||||||||| |||||||||| |||| | |   ||||||||||| ||||||||||||||    
T  31132310 tgtgtatctttcccttcagatattttccgtgccgatgtgaaaaataaaccccctctgatgttaaatatatattttgtagta 31132390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 6770624 - 6770655
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||||||||||||||||||||||||||||||    
T  6770624 cgcctaatccgaagagtgtccgtgcttcatag 6770655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 8420066 - 8420122
Alignment:
Q  104 taattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||||||||||||||||||||||    |||||||| ||| |||| ||||||||||||||    
T  8420066 taattacaagtgtcggtgtcggac---gcgcctaattcgaggagtatccgtgcttcatag 8420122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 21191082 - 21191050
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacaca 130  Q
    ||||| |||||||||||||||||||||||||||    
T  21191082 tcagtgtaattacaagtgtcggtgtcggacaca 21191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 21576716 - 21576684
Alignment:
Q  132 cgcctaatccgaagagtgtccgtgcttcatagc 164  Q
    |||||||||||| ||||||||||||||||||||    
T  21576716 cgcctaatccgaggagtgtccgtgcttcatagc 21576684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 46715 - 46776
Alignment:
Q  98 tcagtctaattacaagtgtcggtgtcggacacatcgcctaatccgaagagtgtccgtgcttcatag 163  Q
    ||||| ||||||||| |||||||||||   ||| |||||||||||| |||||||||||||||||||    
T  46715 tcagtgtaattacaaatgtcggtgtcg---aca-cgcctaatccgaggagtgtccgtgcttcatag 46776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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