View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_low_2 (Length: 502)
Name: NF19833_low_2
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_low_2 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 37216395 - 37215954
Alignment:
| Q |
19 |
tcaatggtctacggaaaataatgcgactctcgagtaaggatataaaagttatgtttaaaacattaaagagaagtagagggaaaatgttgaaagtcgttta |
118 |
Q |
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| T |
37216395 |
tcaatggtctacggaaaataatgcgactctcgagtaaggatataaaagttatgtttaaaacattaaagagaagtagagggaacatgttgaaagtcgttta |
37216296 |
T |
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| Q |
119 |
tgattcatctaaggctgaaggtaacaggggttcaattatcttctagtagttcttatttatcggttaattgtgatatgaaaattttgatggttttacgtga |
218 |
Q |
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| T |
37216295 |
tgattcacctaaggctgaaggtaacaggggttcaattatcttctagtagttcttatttatcggttaattgtgatatgaaaattttgatggttttacgtga |
37216196 |
T |
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| Q |
219 |
taaacatgaagtcacaatggatgaatgcatgaaggattgataagtctattggggtaaaatacaaaggttgcaaggttattattgttattgttttatctga |
318 |
Q |
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| T |
37216195 |
taaacatgaagtcacaatagatg-atgcatgaaggattgataagtctattggggtaaaatacaaaggttgcaaggttattattgttattgttttatctaa |
37216097 |
T |
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| Q |
319 |
gatgaagggtggagaaagaggtgggattacatgttataaagggagtccgcgtgtggtaaggaaggtgttaatgttgtcaaaggggttgtagagagggaag |
418 |
Q |
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| T |
37216096 |
gatgaagggtggagaaagaggggggattacatgttataaagggagtccgcgtgtggtaaggaaggtgttaattttgtcaaaggggttgtagagagggaag |
37215997 |
T |
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| Q |
419 |
tgaggacatgtgagtagtggtggttgttagtgtgaagggtggt |
461 |
Q |
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| T |
37215996 |
tgagggcatgtgagtagtggtggttgttagtgtgaagggtggt |
37215954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 19713506 - 19713474
Alignment:
| Q |
458 |
tggtatcagagcaataatcctcggacaaatatt |
490 |
Q |
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| T |
19713506 |
tggtatcagagcaataatcctcggaaaaatatt |
19713474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0657 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 8572 - 8535
Alignment:
| Q |
458 |
tggtatcagagcaataatcctcggacaaatattcttgg |
495 |
Q |
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| T |
8572 |
tggtatcagagcaataatcctcggactaatatttttgg |
8535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 487
Target Start/End: Original strand, 7646713 - 7646742
Alignment:
| Q |
458 |
tggtatcagagcaataatcctcggacaaat |
487 |
Q |
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| T |
7646713 |
tggtatcagagcaataatcctcggacaaat |
7646742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 19814737 - 19814700
Alignment:
| Q |
458 |
tggtatcagagcaataatcctcggacaaatattcttgg |
495 |
Q |
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| T |
19814737 |
tggtatcagagcaataatcctcggactaatatttttgg |
19814700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 486
Target Start/End: Complemental strand, 25043964 - 25043936
Alignment:
| Q |
458 |
tggtatcagagcaataatcctcggacaaa |
486 |
Q |
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| T |
25043964 |
tggtatcagagcaataatcctcggacaaa |
25043936 |
T |
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