View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_low_3 (Length: 483)
Name: NF19833_low_3
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 24472729 - 24473179
Alignment:
| Q |
13 |
aatataatatgcagttgaggtaatgaatgaagaagcataaatataattgaaatcacaagaatcaagcacaaactataagtgtaaagatggatacaaactt |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
24472729 |
aatataatatgcaattgaggtaatgaatgaagaagcataaatataattgaaatcacaagaatcaagcacaaactatgcaagtaaagatggatacaaacat |
24472828 |
T |
|
| Q |
113 |
agttaaatgtcaaagtttgcttatacttatcagtaactaatgcaatttgaatcattgatttgatcaggttttgttttgcaagaacaaaacggagtatatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
24472829 |
agttaaatgtcaaagtttgcttatacttatcagtaactaatgcaatttgaatcattgatttgatcaggtttttttttgcaagaacaaaagggattatatt |
24472928 |
T |
|
| Q |
213 |
aataatgagcaaaagtgtgcataaaagtttacaaccaaaatcatcacccataatgacaccaaccaagacgagatcaaattgcattacacaatttcctaac |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24472929 |
aataataagcaaaagtgtgcataaaagtttacaaccaaaatcatcacccataatgacaccaaccaagacgagatcaaattgcattacacaatttcctaac |
24473028 |
T |
|
| Q |
313 |
gtattttccacaacagccagcatcattgttatgcagtgtatcttcattttaccacttcaattaagaaaaataaatgaaattttagcatttagatcattca |
412 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24473029 |
gtattttccacaacagccagca----tattatgcagtgtatcttcattttaccacttcaattaagaaaaataaatgaaattttagcatttagatcattca |
24473124 |
T |
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| Q |
413 |
atcaagagaggcatgtaatcagcattatacccttagaattagaacaaaatattac |
467 |
Q |
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| T |
24473125 |
atcaagagaggcatgtaatcagcattatacccttagaactagaacaaaatattac |
24473179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 52 - 467
Target Start/End: Complemental strand, 24419686 - 24419272
Alignment:
| Q |
52 |
aatataattgaaatcacaagaatcaagcacaaactataagtgtaaagatggatacaaacttagttaaatgtcaaagtttgcttatacttatcagtaacta |
151 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |
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| T |
24419686 |
aatataattgaaatcacaagaatcaagcacaaactatgcgaataaagatggatacaaacatagttaaatgtcaaaatttgcttatacttatcactaacta |
24419587 |
T |
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| Q |
152 |
atgcaatttgaatcattgatttgatcaggttttgttttgcaagaacaaaacggagtatattaataatgagcaaaagtgtgcataaaagtttacaaccaaa |
251 |
Q |
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| T |
24419586 |
atgcaatttgaatcattgatttgatcaggttttgttttgcaagaacaaaagggagtatattaataatgagcaaaagtgtgcataaaagtttacaaccaaa |
24419487 |
T |
|
| Q |
252 |
atcatcacccataatgacaccaaccaagacgagatcaaattgcattacacaatttcctaacgtattttccacaacagccagcatcattgttatgcagtgt |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24419486 |
atcatcacccataatgacaccaaccaagacgagatcaaattgcattacacaatttcctaacgtattttccacaacagccagcatcattattatgcagtgt |
24419387 |
T |
|
| Q |
352 |
atcttcattttaccacttcaattaagaaaaataaatgaaattttagcatttagatcattcaatcaagagaggcatgtaatcagcattatacccttagaat |
451 |
Q |
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|||||||||||||||||| | |||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||| |
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| T |
24419386 |
atcttcattttaccactttagttaaaataaataaatgaaattatagcatttagatcattcaat-aagagaggcatgtaatctgaattctacccttagaac |
24419288 |
T |
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| Q |
452 |
tagaacaaaatattac |
467 |
Q |
| |
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||||||||||||||| |
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| T |
24419287 |
cagaacaaaatattac |
24419272 |
T |
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