View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19833_low_6 (Length: 420)
Name: NF19833_low_6
Description: NF19833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19833_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 19578005 - 19577656
Alignment:
| Q |
1 |
ttcaattttaagagcttgatttaattttattatttttaataactaagactaaaattctttgtcaaagaaaaatgaaaaacaactaactaaaatctagaga |
100 |
Q |
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| T |
19578005 |
ttcaattttaagagcttgatttaattttattatttttaataactacgactaaaattctttgtcaaagaaaaatgaaaaacagctaactaaaatctagaga |
19577906 |
T |
|
| Q |
101 |
gttaaaatttgaagagcaggatccatagtcagtcaatag------------tcaatccaagatcacacccattcccttacgatacatccctccacaccat |
188 |
Q |
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| T |
19577905 |
gttaaaatttgaagagcacgatccatagtcagtcaatagtcaacagtcatgtcaatccaagatcacacccattcccttacgatacatccctccacaccat |
19577806 |
T |
|
| Q |
189 |
atcccctccctcaccgcgtgtcaaagtcaccatgaattaatcactttcattcaaatccaaatccaaatcc-nnnnnnntcataacaataccgccaaattt |
287 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
19577805 |
atcccctccctcaccgcgtgtcaaagtcatcatgaattaatcactttcattcaaatccaaatccaaatccaaaaaaaatcacaacaataccgccaaattt |
19577706 |
T |
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| Q |
288 |
tcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19577705 |
tcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc |
19577656 |
T |
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