View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19834_high_2 (Length: 569)
Name: NF19834_high_2
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 10 - 553
Target Start/End: Complemental strand, 51806334 - 51805791
Alignment:
| Q |
10 |
catcatcaaccattcttcttctttggactaatagttattatttccatgaccaacatgtcacatgttatcagcacaaaccaatctgagnnnnnnnctctaa |
109 |
Q |
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| T |
51806334 |
catcatcaaccattcttcttctttggactaatagttattatttccatgaccaacatgtcacatgttatcagcacaaaccaatctgagtttttttctctaa |
51806235 |
T |
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| Q |
110 |
tgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaagg |
209 |
Q |
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| T |
51806234 |
tgaaagagtctctctcaggaaactacccttttgattggggtgtaagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaagg |
51806135 |
T |
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| Q |
210 |
agacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccatcaaatatttgctcttaccttccaaatttacgtgtcctaaacctc |
309 |
Q |
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| T |
51806134 |
agacatcataagtcttgatttttcaggttggtcatcactttccggaaacttcccgtcaaatatttgctcttaccttccaaatttacgtgtcctaaacctc |
51806035 |
T |
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| Q |
310 |
ggtaatacaaaattcaagttcccaacaaacagcataatcaactgttctcacttagaacaactcaacatgaacaagatgcacctgtcaggaacacttcctg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806034 |
ggtaatacaaaattcaagttcccaacaaacagcataatcaactgttctcacttagaactactcaacatgaacaagatgcacctgtcaggaacacttcctg |
51805935 |
T |
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| Q |
410 |
atttctcgtctttaaaatatctcagagtcctcgacttatcatacaactccttcaccggcgattttcccatgtctgttttcaacctcaccaatcttgaaat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805934 |
atttctcgtctttaaaatatctcagagtcctcgacttatcatacaactccttcaccggcgattttcccatgtctgttttcaacctcaccaatcttgaaat |
51805835 |
T |
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| Q |
510 |
tctcaacttcaacgaaaacagtaaactcaatctttgggaattac |
553 |
Q |
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| T |
51805834 |
tctcaacttcaacgaaaacagtaaactcaatctttgggaattac |
51805791 |
T |
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