View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19834_high_3 (Length: 424)
Name: NF19834_high_3
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 235 - 407
Target Start/End: Complemental strand, 15591141 - 15590962
Alignment:
| Q |
235 |
aaatgacattgatttgaatatcatatccccatcgacaaccataata-------tgttgggtttataagtcatcttacttatatgttgttcaatattttta |
327 |
Q |
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| T |
15591141 |
aaatgacattgatttgaatatcatatccccatcgacaaccataatacgttggttgttgggtatataagtcatcttacttatatgttgttcaatattttta |
15591042 |
T |
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| Q |
328 |
ctatcaaatcaacatccgaagcaaaccttttttaaatggatgcaagaatcatggactatggaaaaataaaatgcagaaga |
407 |
Q |
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| T |
15591041 |
ctaccaaatcaacatctgaagcaaaccttttttaaatggatgcaagaatcatggactatggaaaaataaaatgcagaaga |
15590962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 15591310 - 15591251
Alignment:
| Q |
174 |
tggtagaagatccttacttacattcaactcaatatactacggatatcatacatgtttagc |
233 |
Q |
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| T |
15591310 |
tggtagaagatccttacttacatgcaactcaatatactacggatatcatacatgtttagc |
15591251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 15513569 - 15513471
Alignment:
| Q |
24 |
atactgcataagaattatgtttgtaagataattcatagcaataataacttgagttcattagataatatcacatttctaatttattgagaaataatgtta |
122 |
Q |
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| T |
15513569 |
atactgcattagaatcttgtttgttagataatttatagccataataccttaagtgcagtagataatatcacatctttaatttattgagagatcatgtta |
15513471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 15622727 - 15622672
Alignment:
| Q |
353 |
ccttttttaaatggatgcaagaatcatggactatggaaaaataaaatgcagaagat |
408 |
Q |
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| T |
15622727 |
ccttttttaaatggatgcaagaatcatggattactgaaaaagaaaatgcagaagat |
15622672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 15644566 - 15644511
Alignment:
| Q |
353 |
ccttttttaaatggatgcaagaatcatggactatggaaaaataaaatgcagaagat |
408 |
Q |
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| T |
15644566 |
ccttttttaaatggatgcaagaatcatggattactgaaaaagaaaatgcagaagat |
15644511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 15653617 - 15653562
Alignment:
| Q |
353 |
ccttttttaaatggatgcaagaatcatggactatggaaaaataaaatgcagaagat |
408 |
Q |
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| T |
15653617 |
ccttttttaaatggatgcaagaatcatggattactgaaaaagaaaatgcagaagat |
15653562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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