View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19834_high_4 (Length: 384)
Name: NF19834_high_4
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 47 - 368
Target Start/End: Original strand, 49547589 - 49547912
Alignment:
| Q |
47 |
tttgatgttcctttggtagtaaggtgttgaatcccaaaattaaatctgccctttaagcagcttcttcactctagctgcagtaccttttgaatcaattctt |
146 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49547589 |
tttgatgttcctttggcagtaaggtgttgaatcccaaaattaaatctgccctttaagcagcttcttcactctagctgcagtatcttttgaatcaattctt |
49547688 |
T |
|
| Q |
147 |
ttatccttgaaaccttgcaggacttttaaaaactcataataactttccctcttatctt-aaatgcaacttttattgccttaagaagcggtgatgcatctt |
245 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49547689 |
ttatccttgaaaccttgtaggacttttgaaaactcataataactttccctcttatcttgaaatgcaacttttattgccttaagaagcggtgatgcatctt |
49547788 |
T |
|
| Q |
246 |
taaaccctaatgatatgaaagtttgaattc-gtgttcctttggcaggaagaaattgaatcccaacattaaattcgagttacctttaaacagcctcttcac |
344 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49547789 |
taaaccttaatgatatgaaagtttgaattctgtgttcctttggcaggaaggaattgaatcccaacattaaattcgagttccctttaaacagcctcttcac |
49547888 |
T |
|
| Q |
345 |
tcttgctttgacagctatactatc |
368 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49547889 |
tcttgctttgacagctatactatc |
49547912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 33856943 - 33856891
Alignment:
| Q |
39 |
aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
91 |
Q |
| |
|
|||| ||||||||||||||||| | || ||||| ||||||||||||||||||| |
|
|
| T |
33856943 |
aagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaat |
33856891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 33923980 - 33924032
Alignment:
| Q |
39 |
aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
91 |
Q |
| |
|
|||| ||||||||||||||||| | || ||||| ||||||||||||||||||| |
|
|
| T |
33923980 |
aagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaat |
33924032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 45191285 - 45191217
Alignment:
| Q |
23 |
actaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
91 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||| || |||| ||||| ||||||||||||| |
|
|
| T |
45191285 |
actaaccagtggtgtggagtgtgatttgatgttcctttggcaggaaggcattgaaccccaaaattaaat |
45191217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 45191256 - 45191178
Alignment:
| Q |
277 |
tgttcctttggcaggaagaaattgaatcccaacattaaattcgagttacctttaaacagcctcttcactcttgctttga |
355 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||| | | ||||||| ||||| ||||||| ||||||||| |
|
|
| T |
45191256 |
tgttcctttggcaggaaggcattgaaccccaaaattaaatttgcatgccctttaagcagccccttcactattgctttga |
45191178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 308
Target Start/End: Complemental strand, 14961583 - 14961270
Alignment:
| Q |
2 |
tgcaatcaataatcataaaccactaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaatc----tgccc |
97 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||| |||| || || || ||||||| | || ||| |||||||||||||||||| ||| ||||| |
|
|
| T |
14961583 |
tgcaatgaataatcataaactactaaccagtcgtccaaagtgtggttcaatattccttttgcaggaagatgttgaatcccaaaattagatctgtatgccc |
14961484 |
T |
|
| Q |
98 |
tttaagcagcttcttcactctagctgcagtaccttttgaatcaattcttttatccttgaaaccttgcaggacttttaaaaactcataataactttccctc |
197 |
Q |
| |
|
||||||||||| ||| ||||| || || |||| || |||||||| ||||||||||||| ||| | |||||||||||| |||| |||| |||||||| |
|
|
| T |
14961483 |
tttaagcagctccttgactcttgcagcgacacctcttatatcaattc-tttatccttgaaatcttttatgacttttaaaaagtcattataattttccctc |
14961385 |
T |
|
| Q |
198 |
ttatctt-aaatgcaacttttattgccttaagaagcggtgatgcatctttaaaccctaatga---tatgaaagtttgaattcgtgttcctttggcaggaa |
293 |
Q |
| |
|
||||||| ||| |||||||| | ||||||| ||| | | |||||||||||||||||||| | || ||||| ||| || ||||||||||||||||| |
|
|
| T |
14961384 |
ttatcttgaaacgcaactttgactgccttacgaaaggctaatgcatctttaaaccctaataaccctaataaagtgtgatttgatgttcctttggcaggaa |
14961285 |
T |
|
| Q |
294 |
gaaattgaatcccaa |
308 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
14961284 |
ggtgttgaatcccaa |
14961270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 14961314 - 14961269
Alignment:
| Q |
39 |
aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaa |
84 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
14961314 |
aagtgtgatttgatgttcctttggcaggaaggtgttgaatcccaaa |
14961269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University