View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19834_high_7 (Length: 279)

Name: NF19834_high_7
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19834_high_7
NF19834_high_7
[»] chr8 (1 HSPs)
chr8 (106-262)||(29715871-29716027)
[»] chr6 (4 HSPs)
chr6 (30-100)||(22868493-22868563)
chr6 (30-94)||(9290663-9290727)
chr6 (51-133)||(21862689-21862770)
chr6 (31-100)||(18984529-18984598)
[»] scaffold0446 (1 HSPs)
scaffold0446 (135-248)||(7789-7902)
[»] chr4 (4 HSPs)
chr4 (135-248)||(56071469-56071582)
chr4 (21-109)||(16871674-16871762)
chr4 (30-94)||(37945522-37945586)
chr4 (30-83)||(24131825-24131878)
[»] chr7 (6 HSPs)
chr7 (21-109)||(46963064-46963152)
chr7 (32-109)||(46964429-46964506)
chr7 (21-109)||(6840606-6840694)
chr7 (32-94)||(15614261-15614323)
chr7 (30-94)||(2628252-2628316)
chr7 (30-86)||(26403493-26403549)
[»] chr2 (4 HSPs)
chr2 (21-109)||(8986950-8987038)
chr2 (21-100)||(38583491-38583570)
chr2 (21-109)||(8985597-8985685)
chr2 (31-94)||(32291193-32291256)
[»] chr1 (4 HSPs)
chr1 (21-109)||(6696038-6696126)
chr1 (21-100)||(15630146-15630225)
chr1 (32-94)||(15629358-15629420)
chr1 (32-94)||(28665018-28665079)
[»] chr3 (7 HSPs)
chr3 (32-94)||(50294694-50294756)
chr3 (32-109)||(18088145-18088221)
chr3 (30-94)||(42531327-42531391)
chr3 (25-133)||(46691453-46691559)
chr3 (30-94)||(50297498-50297562)
chr3 (21-133)||(814385-814498)
chr3 (63-109)||(814283-814329)
[»] chr5 (1 HSPs)
chr5 (32-94)||(11320486-11320547)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 106 - 262
Target Start/End: Original strand, 29715871 - 29716027
Alignment:
Q  106 ttaaagtcattaactttattatctaacactcactagcacctcaaactttcgaaaatacctgcaccagaagtttcaaatcgttcgacgatgaatggtagtt 205  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29715871 ttaaaatcaataactttattatctaacactcactagcacctcaaactttcgaaaatacctgcaccagaagtttcaaatcgttcgacgatgaatggtagtt 29715970  T
Q  206 aaaaattgttttcaaagactttttagatcggttacatgtttaattaaccgttctaaa 262  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29715971 aaaaattgttttcaaagactttttagatcggttacacgtttaattaaccgttctaaa 29716027  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 22868563 - 22868493
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgccca 100  Q
    ||||||||||| |||||||  ||||||||| ||||||||||||| ||| |||||||||||||||| |||||    
T  22868563 acattacaaaaagttataagagaatatataataaaacctaatggactctaacttactaatataaaagccca 22868493  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 9290663 - 9290727
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||||| |||||||  ||||||||| ||||||||||||| ||| |||||| |||||||||    
T  9290663 acattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaa 9290727  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 21862770 - 21862689
Alignment:
Q  51 gaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaaagtcattaactttattatctaaca 133  Q
    ||||||||| ||||||||||||  ||| ||||| ||||||||||  |||| ||||||||  ||| | ||||||||||||||||    
T  21862770 gaatatataataaaacctaatgcactctaacttgctaatataaagacccaatagcttaagctcaat-actttattatctaaca 21862689  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 18984598 - 18984529
Alignment:
Q  31 cattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgccca 100  Q
    |||||| ||| |||||||  ||||||||| |||||| |||||  ||| |||||||||||||||| |||||    
T  18984598 cattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatataaaggccca 18984529  T

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Target: scaffold0446 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 7789 - 7902
Alignment:
Q  135 tcactagcacctcaaactttcgaaaatacctgcaccagaagtttcaaatcgttcgacgatgaatggtagttaaaaattgttttcaaagactttttagatc 234  Q
    |||| |||||||||||||| | |||||||||  ||||  |||| |||| |||||  |||||||||||| |||| |||||||  |||| ||||||||||||    
T  7789 tcacaagcacctcaaacttccaaaaatacctctaccatgagttacaaaccgttctgcgatgaatggtaattaacaattgttcccaaaaactttttagatc 7888  T
Q  235 ggttacatgtttaa 248  Q
    | ||||| ||||||    
T  7889 gattacacgtttaa 7902  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 56071582 - 56071469
Alignment:
Q  135 tcactagcacctcaaactttcgaaaatacctgcaccagaagtttcaaatcgttcgacgatgaatggtagttaaaaattgttttcaaagactttttagatc 234  Q
    |||| |||||||||||||| | |||||||||  ||||  |||| |||| |||||  |||||||||||| |||| |||||||  |||| ||||||||||||    
T  56071582 tcacaagcacctcaaacttccaaaaatacctctaccatgagttacaaaccgttctgcgatgaatggtaattaacaattgttcccaaaaactttttagatc 56071483  T
Q  235 ggttacatgtttaa 248  Q
    | ||||| ||||||    
T  56071482 gattacacgtttaa 56071469  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 16871762 - 16871674
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    |||| ||| ||||||||||| |||||||   |||||||| ||||| ||||||| ||| |||||||||||||||||||||| || |||||    
T  16871762 aatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaatataaatgcccaataacttaa 16871674  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 37945586 - 37945522
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||||| |||||||  ||||||||| |||||  |||||| ||| ||||||||||||||||    
T  37945586 acattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 24131878 - 24131825
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaactt 83  Q
    |||||||||||||||||||  ||| ||||| ||||||||||||| ||| |||||    
T  24131878 acattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 46963064 - 46963152
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    |||| ||| ||||||||||| |||||||  |||||| || ||||| ||||||| ||| |||||||||||||||||||||| || |||||    
T  46963064 aatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataacttaa 46963152  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 46964429 - 46964506
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    ||||||||| |||||||  ||||||||| ||||| ||||||| ||| ||| |||||||||||||||||| || |||||    
T  46964429 attacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaataacttaa 46964506  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 6840606 - 6840694
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    |||| ||| ||||||||||| |||||||  ||||||||| |||||||||| || ||| |||||||| ||||||| ||||| || |||||    
T  6840606 aatagctttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactgatataaaggcccaataacttaa 6840694  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 15614261 - 15614323
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||| |||||||  ||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  15614261 attacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatataaa 15614323  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 2628252 - 2628316
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    |||||||||||  |||| |  ||||||||| ||||||||||||| ||| ||||||||||||||||    
T  2628252 acattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaa 2628316  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 26403549 - 26403493
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttact 86  Q
    ||||||||||| |||||||  ||||||||| ||||| ||||| ||||| ||||||||    
T  26403549 acattacaaaaagttataagagaatatataataaaatctaatcggctctaacttact 26403493  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 8987038 - 8986950
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    |||| ||| ||||||||||| |||||||  ||||||||| |||||  |||||| ||| |||||||||||||||||||||| || |||||    
T  8987038 aatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatgcccaataacttaa 8986950  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 38583491 - 38583570
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgccca 100  Q
    ||||| |||||||||||||| |||||||  ||||||||| ||||| |||| ||| || |||||||||||||||| |||||    
T  38583491 aataaattgacattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatataaaggccca 38583570  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 8985685 - 8985597
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    |||| ||| ||||||||||| |||||||  ||||||||| ||||| ||||||| ||  |||||||||||||||||| ||| || |||||    
T  8985685 aatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataacttaa 8985597  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 32291256 - 32291193
Alignment:
Q  31 cattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    |||||||||| |||||||  ||||||||| |||| | |||||| ||| ||||||||||||||||    
T  32291256 cattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatataaa 32291193  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 6696126 - 6696038
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    |||| ||| ||||||||||| |||||||  |||||| || ||||| ||||||| ||| |||||||||||||||||||||| || |||||    
T  6696126 aatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataacttaa 6696038  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 15630146 - 15630225
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgccca 100  Q
    |||||||| | ||| ||||| |||||||  ||||||||| ||||||||||| | ||| |||||||||||||||| |||||    
T  15630146 aataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaaggccca 15630225  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 15629358 - 15629420
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||| |||||||  ||||||||| ||||| ||||||  ||| ||||||||||||||||    
T  15629358 attacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataaa 15629420  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 28665079 - 28665018
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||||||||| |  ||||||||| |||| |||||||| ||| ||||||||||||||||    
T  28665079 attacaaaatgttatgagagaatatataataaa-cctaatggactctaacttactaatataaa 28665018  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 50294756 - 50294694
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    |||||||||||||||||   |||||||| ||||||||||||| ||| |||||| |||||||||    
T  50294756 attacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaa 50294694  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 18088145 - 18088221
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    ||||||||||||||| |  ||||||||| |||| |||||||| ||| |||||||||||||||| ||| | ||||||||    
T  18088145 attacaaaatgttatgagagaatatataataaa-cctaatggactctaacttactaatataaaggcctaatagcttaa 18088221  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 42531391 - 42531327
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||||| |||||||  ||||||||| ||||||||||||  ||  ||||||||||||||||    
T  42531391 acattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaa 42531327  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 46691453 - 46691559
Alignment:
Q  25 acttgacattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaatgcccactagcttaaagtcattaactttat 124  Q
    |||| ||||||||||| |||||||  ||||||||| ||||| ||||||| ||| ||||||||| |||||| | ||| || |||||  ||| | |||||||    
T  46691453 acttaacattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtataaaggtccaataacttaagttcaat-actttat 46691550  T
Q  125 tatctaaca 133  Q
    |||||||||    
T  46691551 tatctaaca 46691559  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 50297562 - 50297498
Alignment:
Q  30 acattacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||||| ||||||| |||| ||||| |||||| |||||  ||| ||||||||||||||||    
T  50297562 acattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatataaa 50297498  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 814385 - 814498
Alignment:
Q  21 aataacttgacattacaaaatgttataattgaatatatagta--aaacctaatgggctccaacttactaatataaatgcccactagcttaaagtcattaa 118  Q
    |||| ||| ||||||||| | |||||||  |||||||||  |  ||||||||||| ||| |||||||||||||||||||||| || |||||   || ||     
T  814385 aatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaata- 814483  T
Q  119 ctttattatctaaca 133  Q
    |||||||||||||||    
T  814484 ctttattatctaaca 814498  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 814329 - 814283
Alignment:
Q  63 aaacctaatgggctccaacttactaatataaatgcccactagcttaa 109  Q
    ||||||||||| ||| |||||||||||||||||||||| || |||||    
T  814329 aaacctaatggactctaacttactaatataaatgcccaataacttaa 814283  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 11320486 - 11320547
Alignment:
Q  32 attacaaaatgttataattgaatatatagtaaaacctaatgggctccaacttactaatataaa 94  Q
    ||||||||| |||||||  ||||||||| |||||  |||||| ||||||||||||||||||||    
T  11320486 attacaaaaggttataagagaatatataataaaat-taatggactccaacttactaatataaa 11320547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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