View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19834_low_1 (Length: 763)
Name: NF19834_low_1
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Complemental strand, 34563831 - 34563215
Alignment:
| Q |
18 |
aataaaatattaaaaaacaaatctaaactaagctataaataccatattccaagctcttacaaacattaagttcagccaacatatattggaccgtcacaat |
117 |
Q |
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| T |
34563831 |
aataaaatattaaaaaataaatctaaactaagctataaataccatattccaagctcttacaaacattaagttcagccaacatatattggaccgtgacaat |
34563732 |
T |
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| Q |
118 |
tgagaagaatatatatagaatgaccaaagaaacgagaattttgggttgcattttgttagtgttggttctaagtggtggaggtgagacacgacatttgaac |
217 |
Q |
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| T |
34563731 |
tgagaa--------------tgaccaaagaaacgagaattttgagttgcattttgttagtgttggttctatgtggtagaggtgagacacgacatctgaac |
34563646 |
T |
|
| Q |
218 |
ccaacaatggtaagtgatcatcacatgttagcaacttctcattggaattggaattccatacaaccatttgcaaaagaagaaggtggaaaacgtgacgagc |
317 |
Q |
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| T |
34563645 |
ccaacaatggtaagtgatcatcacatgttagcaacttctcattggaattggaattccatacaaccatttccagaagaagaaggtggaaaacgtgacgagc |
34563546 |
T |
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| Q |
318 |
ttcaaagattaagtcccggtggacctgatgcccatcatcattgagtacttgaaaactattcataaacccctatattgtcaatatct--tattgaaattaa |
415 |
Q |
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| T |
34563545 |
tacaaagattaagtcccggtggacctgacgctcatcatcattaattatatcaaaactattcataaacctctgtattgtcaatatcttatattgaaattaa |
34563446 |
T |
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| Q |
416 |
taattggtttatgaggatatatagtaattgtatacaattttcatgtaaatgttcgttaccttctc------atatatgtataaaatgtttatgttgatgt |
509 |
Q |
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| T |
34563445 |
taattggtttatgaggatatatag---ttgcataaaattttcatgtaaatgttcgttacattctcatatatatatatgtataaaatgttgatgttgatgt |
34563349 |
T |
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| Q |
510 |
tatagactagatgatgctgtatatagttaagttgcacatgatcattgttgtgtacccatgtattcatccggaccc--tatggtgttacttgtttgaactt |
607 |
Q |
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| T |
34563348 |
tatagactagatggtgctgtatatagttaagttgcacatgatcattgttatg------tgtattcatccggaccctatatggtgttgcttgtttgaactt |
34563255 |
T |
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| Q |
608 |
gaatataaatctcggagagctaatagaagatttagggcca |
647 |
Q |
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| T |
34563254 |
gaatacaaaactcagagagctaatagaagatttagggcca |
34563215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 707
Target Start/End: Complemental strand, 34563164 - 34563114
Alignment:
| Q |
657 |
tgttgcgagcggacatgttagtaagcagcataagataccatattagagact |
707 |
Q |
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| T |
34563164 |
tgtttcgagcggacgtgttagtaagacgcataaaataccatattagagact |
34563114 |
T |
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