View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19834_low_12 (Length: 212)
Name: NF19834_low_12
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 38095012 - 38095103
Alignment:
| Q |
25 |
cttgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatatt |
116 |
Q |
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| T |
38095012 |
cttgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatatt |
38095103 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 40642189 - 40642253
Alignment:
| Q |
32 |
cattggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctt |
96 |
Q |
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| T |
40642189 |
cattgatttcagcaatatatgcttctaatgagttcaaatttgcaatcgatttgtttctatttctt |
40642253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 32019298 - 32019344
Alignment:
| Q |
55 |
gctaatgggttcagattttcaatcgatttgtttctatttctttgatt |
101 |
Q |
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| T |
32019298 |
gctaatgagttcatattttcaattcatttgtttctatttctttgatt |
32019344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 2758147 - 2758091
Alignment:
| Q |
27 |
tgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgattt |
83 |
Q |
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| T |
2758147 |
tgcagcattgatttcaacaatatatgctgctaatgagttcatattttcaatcgattt |
2758091 |
T |
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