View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19834_low_6 (Length: 346)
Name: NF19834_low_6
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 30612191 - 30612505
Alignment:
| Q |
14 |
aatattgtgaggaaattttccttacctacaaggttgtgattgtttcatattgcattagttctatcttgcttcctaattctattgtagaagttattcaaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30612191 |
aatattgtgaggaaattttccttacctacaaggttgtgattgtttcatattgcattagttctatcttgcttcctaattctattgtagaagttattcaaaa |
30612290 |
T |
|
| Q |
114 |
gatgatattatgttaaagcgaaccaagagaaataaattgaatgggtaggcatggaaaatttcatgacttgtaggtgttcaatctaacaatgttgggaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30612291 |
gatgatattatgttaaagcgaaccaagagaaataaattgaatgggtaggcatggaaaatttcatgacttgtaggtgttcaatctaacaatgttgggaaca |
30612390 |
T |
|
| Q |
214 |
aaagttgtaaattcttaagcaaccaaaattctatgatttctagagttttcaaagaaaaatattttcgacaatggaattttgggggcaat--ggcaatagc |
311 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||| |
|
|
| T |
30612391 |
aaagttgtaaattcttaagcaacccaaattctatgatttctagagttttcaaagaaaaatattttcgacgatggaatattgggggctattaggcaatagc |
30612490 |
T |
|
| Q |
312 |
ttaagctatgtttgg |
326 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
30612491 |
ttaagttatgtttgg |
30612505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University