View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19834_low_7 (Length: 294)
Name: NF19834_low_7
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 9579356 - 9579627
Alignment:
| Q |
1 |
atttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaatccatacataaactttgacgaatttattctca |
100 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
9579356 |
atttagcaaaaacaaacatccactgatacccctaagcatgctagcgggttcgaccaccactggttcaatccatacataaactttgacgactttaatctca |
9579455 |
T |
|
| Q |
101 |
accaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaatgctcc |
200 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
9579456 |
accaactcgatgataaaagattgacactatcgacaatcgattcagtatcc--aatccttataatgaaaaatcctttcatttctcgccttccaaatgctcc |
9579553 |
T |
|
| Q |
201 |
acatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaat |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9579554 |
acatactcgtgaaccaaatggcttcaagttcctgaactgcatctttcgtca--cgaaccagccctgtaaaggtaat |
9579627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9584891 - 9585116
Alignment:
| Q |
1 |
atttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaat---ccatacataaactttgacgaatttattc |
97 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || |
|
|
| T |
9584891 |
atttagcaaaaacaaacatcccccgatacccctaagcatgctagcgggttcgaccaccactggttcaatattccatacataaactttgacgactttaatc |
9584990 |
T |
|
| Q |
98 |
tcaaccaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaatgc |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||| || | | |||||||||||| |||||| |
|
|
| T |
9584991 |
tcaaccaactcaatgataaaagcttgacactatggacaagcaattcagtatcc--aatccttatgatgaaaaacccttgcatttctcgccttcaaaatgc |
9585088 |
T |
|
| Q |
198 |
tccacatactcgcgaaccaaatggcttc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9585089 |
tccacatactcgcgaaccaaatggcttc |
9585116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 32718915 - 32718643
Alignment:
| Q |
1 |
atttagcaataacaaacatcccccaatacccctaagcatactagcgggttcgaccaccactggttcaatccatacataaactttgacgaatttattctca |
100 |
Q |
| |
|
||||||| | ||||||||||||| ||||| |||||||| |||| |||||| |||| |||| ||||| ||||| ||||||||||||| | || |||| |
|
|
| T |
32718915 |
atttagcgagaacaaacatcccctgatacctctaagcatgctagagggttcaaccagcact--ttcaaatcatacttaaactttgacgactctaatctct |
32718818 |
T |
|
| Q |
101 |
accaacttaatgataaaagcttgacactgtcgacaatcaattcagtatcccaaatccttatgatgaaaaatccctccctttctcgccttccaaatgctcc |
200 |
Q |
| |
|
|||||| | |||||||||||||||||||| | |||| ||||| ||| ||| ||||||||||||||||||| | | |||||||||||| ||||| ||| |
|
|
| T |
32718817 |
gccaactccacgataaaagcttgacactgtccataatcgattcatcatctcaa-tccttatgatgaaaaatccttgcatttctcgccttcgaaatgttcc |
32718719 |
T |
|
| Q |
201 |
acatactcgcgaaccaaatggcttcaagtccctgaaaggcatctttcgtcacgcgaaccagccctgtaaaggtaat |
276 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |||||||| || | | |||||||||||||||| ||||| |
|
|
| T |
32718718 |
acatactcgcgaaccagatggcttccagtccctgaactgcatcttttgttatgggaaccagccctgtaaatgtaat |
32718643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University