View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19834_low_9 (Length: 219)
Name: NF19834_low_9
Description: NF19834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19834_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 14001097 - 14001017
Alignment:
| Q |
46 |
acaaaacatcttctcatactccccactctgcagtttaacaacctcctccttaaacatcctattaacctgatcaatattctt |
126 |
Q |
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| T |
14001097 |
acaaaacatcttctcatactccccactctgcagtttaacaacctcctccttaaacatcctatcaacctgatcaatattctt |
14001017 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14001128 - 14001092
Alignment:
| Q |
1 |
caaacagcaatgatatagcatcattcttattacaaaa |
37 |
Q |
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| T |
14001128 |
caaacagcaatgatatagcatcattcttattacaaaa |
14001092 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 1472209 - 1472135
Alignment:
| Q |
54 |
tcttctcatactccccactctgcagtttaacaacctcctccttaaacatcctattaacctgatcaatattcttcg |
128 |
Q |
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||||||||| |||||| |||||| ||||||||||||| ||||| |||| || |||||||||||||||||||| |
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| T |
1472209 |
tcttctcatgctccccgctctgcgtcttaacaacctccttcttaagcatcataacaacctgatcaatattcttcg |
1472135 |
T |
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