View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19835_high_8 (Length: 311)
Name: NF19835_high_8
Description: NF19835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19835_high_8 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 25346 - 25065
Alignment:
| Q |
1 |
tcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgttatctaattccatcccgaaaaagtcatcaagctttc |
100 |
Q |
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| T |
25346 |
tcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgttatctaattccatcccgaaaaagtcatcaagctttc |
25247 |
T |
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| Q |
101 |
ttctacactgaaattttaagtacatgtgttataattataataaggtcatgctaacgggtgtccctgaaacaccagttaaagaaacaaaaaataatcattt |
200 |
Q |
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| T |
25246 |
ttctacactgaaattttaagtacatgtgttataattataataaggtcatgctaacgggtgcccctgaaacaccagttaaagaaacaaaaaataat-attt |
25148 |
T |
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| Q |
201 |
tcatagattcaaggagttaattgaagcaaaacttgttgaaaattaatgaaatgggagtctaatcgaacctgaagagcatggtg |
283 |
Q |
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| T |
25147 |
tcatagattcaaggagttaattgaagcaaaacttgttgataattaatggaatgggagtttaatcgaacctgaagagcatggtg |
25065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 39943 - 39821
Alignment:
| Q |
1 |
tcttcaatttgcatcaacccatccattagatcaattgt---ttccaccttatctttattctttctgttatctaattccatcccgaaaaagtcatcaagct |
97 |
Q |
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||||||||||||||||||||||||||||||||| |||| || |||||||| || ||||||||| ||| |||| ||||||| |||| ||| ||||||| |
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| T |
39943 |
tcttcaatttgcatcaacccatccattagatcacttgtacttttcaccttattttcattctttcttttacctaactccatccaaaaaatgtcctcaagct |
39844 |
T |
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| Q |
98 |
ttcttctacactgaaattttaag |
120 |
Q |
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| T |
39843 |
ttcttctacactaaaattttaag |
39821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32556 - 32435
Alignment:
| Q |
1 |
tcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgttatctaattccatcccgaaaaagtcatcaagctttc |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||| || | ||||| || ||||||||||||| || | ||| || | ||||| |
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| T |
32556 |
tcttcaatttgcatcaacccatccattagatcacttgtttcaaccttattttcagcttttcttttctctaattccatccaaaagatgtcctccaactttc |
32457 |
T |
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| Q |
101 |
ttctacactgaaattttaagta |
122 |
Q |
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| T |
32456 |
ttctacactgaaattttgagta |
32435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 4878 - 5008
Alignment:
| Q |
1 |
tcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattctttctgttatctaattccatcccgaaaaagtcatcaagctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||| |
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| T |
4878 |
tcttcaatttgcatcaacccatccattagatcaattgtttccaccttatctttattttttctgttatctatttcaatccagaaaaagtcatcaagctttc |
4977 |
T |
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| Q |
101 |
ttctacactgaaattttaagtacatgtgtta |
131 |
Q |
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| T |
4978 |
ttctacactgaaattttaattaaatgtgtta |
5008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 5023 - 5103
Alignment:
| Q |
203 |
atagattcaaggagttaattgaagcaaaacttgttgaaaattaatgaaatgggagtctaatcgaacctgaagagcatggtg |
283 |
Q |
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| T |
5023 |
atagattcaaggagttaattgaagcaaaacttgttgatgattaattaaatgggagtttaatggaacctgaagagcatggtg |
5103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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