View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19835_low_1 (Length: 377)
Name: NF19835_low_1
Description: NF19835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19835_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 3744851 - 3745221
Alignment:
| Q |
1 |
cctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744851 |
cctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgtta |
3744950 |
T |
|
| Q |
101 |
tcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatgaattctgatcttccttaatatctgcaggagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744951 |
tcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatgaattctgatcttccttaatatctgcaggagtag |
3745050 |
T |
|
| Q |
201 |
cagccattgccttggcatctctaacataggatctagttggagcattgtgtgatgatgtcttctccacattgtcatctgaaagatccatcatctggtgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| | |
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| T |
3745051 |
cagccattgccttggcatctctaacataggatctagttggagcattgtgtgatgatgtcttctccatattgtcatctgaaaggtccatcatttggtgaag |
3745150 |
T |
|
| Q |
301 |
agcgtgtagcactggagcatctaaacccatcaacctgaaatccattctcacactttttcttgatattcttc |
371 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3745151 |
agcgtgtagcactggagcatccaaacccatcaacctgaaatccattctcacactttttcttgattttcttc |
3745221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 48303055 - 48303219
Alignment:
| Q |
1 |
cctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgtta |
100 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |||||||| || |||||||||| |||||| || |
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| T |
48303055 |
cctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttctcttcttctctcttcctttcaccgcttatcagaagcacattc |
48303151 |
T |
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| Q |
101 |
tcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
168 |
Q |
| |
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|||||||| ||||||||||| || || ||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
48303152 |
tcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
48303219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
60 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
159 |
Q |
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||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| |
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| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
|
| Q |
160 |
cacgtatga |
168 |
Q |
| |
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||| |||| |
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|
| T |
10462170 |
tacgaatga |
10462162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
60 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
159 |
Q |
| |
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||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
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| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
|
| Q |
160 |
cacgtatgaattctgatcttcctt |
183 |
Q |
| |
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|||||| || || |||| |||||| |
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| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
26 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
105 |
Q |
| |
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||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
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| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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