View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19835_low_2 (Length: 300)
Name: NF19835_low_2
Description: NF19835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19835_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 861608 - 861902
Alignment:
| Q |
1 |
agtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagatacca |
100 |
Q |
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| T |
861608 |
agtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagatacca |
861707 |
T |
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| Q |
101 |
agggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaa |
200 |
Q |
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| T |
861708 |
agggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaa |
861807 |
T |
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| Q |
201 |
taataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
295 |
Q |
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| T |
861808 |
taataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
861902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 1222885 - 1223179
Alignment:
| Q |
1 |
agtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagatacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1222885 |
agtgaagacaacaaagacagaggcacaaaccatggtgacaacaatgagaacatccaaaacaaatgcccagacaaagaattcagcagaaatgtagatacca |
1222984 |
T |
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| Q |
101 |
agggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaa |
200 |
Q |
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| T |
1222985 |
agggcaacacccatagcaatggagtaaacagtccttagttcaacaatgtatttaatgggtatgattgatgtaatggatgctagagtcagcaatatagcaa |
1223084 |
T |
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| Q |
201 |
taataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1223085 |
taataagcagccaagagggccaggtaggcttcccagctataaagccataaattgagatatcatcatcagaatgacgggcagttttgatgatgtcc |
1223179 |
T |
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