View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_11 (Length: 497)
Name: NF19836_high_11
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 37126898 - 37127249
Alignment:
| Q |
7 |
aaaggacaagagaataatccaactaagggagactttttgatacaaattaatgacaattaaattttatattgatgtaaaggacttcatatgaatgcattat |
106 |
Q |
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| T |
37126898 |
aaaggacaagagaataatccaactaagggagacttttttatacaaattaatgacaattaaattttatattgatgtaaaggacttcatatgaatgcattat |
37126997 |
T |
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| Q |
107 |
tggtatttttcttttattgtgtttggactctctcccaaaatggaaatgattccactttagaaaaaatcaattccctatggtatgtaaaaatggtatgatg |
206 |
Q |
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| T |
37126998 |
tggtatttttcttttattgtgtttggactctctcccaaaatggaaatgattccactttagaaaa-atcaattccctatggtatgtaaaaatggtatgata |
37127096 |
T |
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| Q |
207 |
aagagaaaaataaaatacaatcatataaagaggggttactaacttactattgacattttcttttttgaaacaaggggttactattgacatgaaaggcttt |
306 |
Q |
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| T |
37127097 |
aagagaaaaataaaataaaatcatataaagaggggttactaacttactattgacattttcttttttgaaacaaggggttactattgacatgaaaggcttt |
37127196 |
T |
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| Q |
307 |
tacaatctctccatctctcatgaatgtgggttttgttgcatactttaatcaac |
359 |
Q |
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| T |
37127197 |
tacaatctctccatctctcatgaatgtgggttttgttgcatactctaatcaac |
37127249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 37127313 - 37127374
Alignment:
| Q |
422 |
cgatgtgatttatttagtaannnnnnnaagagttgttgagttggagtgagtgagtagttatt |
483 |
Q |
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| T |
37127313 |
cgatgtgatttatttagtaatttttttaagagttgttgagttggagtgagtgagtagttatt |
37127374 |
T |
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