View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_13 (Length: 460)
Name: NF19836_high_13
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 3810860 - 3810430
Alignment:
| Q |
10 |
aagaatatacaggatccaaccaagtagagggtgaattgtgtgaggtatgataaagacaggtgttacgtaagcagcaagtatgcaccacaatgctactaat |
109 |
Q |
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| T |
3810860 |
aagaaaatacaggatccaaccaagtagagggtgaattgtgtgaggtatgataaagactggtgttacgtaagcagcaagtatgcaccacaatgctactaat |
3810761 |
T |
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| Q |
110 |
tttaggctgttgtgtgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaatgcgtcattgctattattccta |
209 |
Q |
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| T |
3810760 |
tttaggctgctgtgtgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaacgcgtcattgctattattccta |
3810661 |
T |
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| Q |
210 |
tgtatattgcagattggataaatatcacagccatctccgaagcatacctgcaccaattataagtcaaattttacatcagctttcagtttcataatgtgag |
309 |
Q |
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| T |
3810660 |
tgtatattgcagattggataaatatcacagccatctccgaagcatacctgcaccaattataagtcaaattttacatcagctttcagtttcataatgtgag |
3810561 |
T |
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| Q |
310 |
aaaattatctggcgcgacagaaataaggactaccagaaacaaatgaacataatgccaagtgagcatatctatcacttaacatataaatatattctgaaat |
409 |
Q |
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| T |
3810560 |
aaaattatctggcgcgacagaaataaggactaccagaaacaaatgaacataatgccaagtgagcatatctatcacttaacatataaatatattctgaaat |
3810461 |
T |
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| Q |
410 |
cttctgtctaagaagttatagactattagac |
440 |
Q |
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| T |
3810460 |
cttctgtctaagaagttatagactattagac |
3810430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 41672783 - 41672925
Alignment:
| Q |
101 |
gctactaattttaggctgttgtgtgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaatgcgtcattgcta |
200 |
Q |
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||||||| ||| ||| |||| ||| ||| |||||||||||||| || || | | |||| |||||||||||| |||||||||||| | |||| ||||| |
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| T |
41672783 |
gctactagtttgaggatgttttgtaccaatgtgatgctcttatcagagcggcggtagcataattttgagaggcttggccttgccaaacgagtcagtgcta |
41672882 |
T |
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| Q |
201 |
ttattcctatgtatattgcagattggataaatatcacagccat |
243 |
Q |
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| T |
41672883 |
ttattccaagatatattgctgattgaataagtatcacagccat |
41672925 |
T |
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