View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_16 (Length: 426)
Name: NF19836_high_16
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 1445022 - 1445438
Alignment:
| Q |
1 |
tcataatagaagaattcacctcctcccactcatgttaatattaacgatgtttgcaactaaagattgtttctttttagaacaggtgatgccctttttgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445022 |
tcataatagaagaattcacctcctcccactcatgttaatattaacgatgtttgcaactaaagattgtttctttttagaacaggtgatgccctttttgcat |
1445121 |
T |
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| Q |
101 |
tcaggaacaacttagatgatcctaacaatgctcttcaaagttgggatgctacccttgtcaatccctgcacgtggtttcatattacatgcagtggtggtag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445122 |
tcaggaacaacttaaatgatcctaacaatgctcttcaaagttgggatgctacccttgtcaatccctgcacgtggtttcatattacatgcagtggtggtag |
1445221 |
T |
|
| Q |
201 |
agtaatccgggtgtaagtcgttacgtcatttttacctgtgattttatgaatctttgtcaatgtaatgaactgtttattattattaaaannnnnnnnnnnn |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1445222 |
agtaatccgggtgtaagtcgttatgtcatttttacctgtgattttatgaatctttgtcaatgtaatgaactgtttattattattatatttttttatattt |
1445321 |
T |
|
| Q |
301 |
nnnnnnngtatttggacagttatcttgcaaatgaaaacctttctggtaatctggtttcaaatcttggtgttctctcaaatttggagtacttgtaagttgt |
400 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445322 |
tttttttgtatttggacagtgatcttgcaaatgaaaacctttctggtaatctggtttcaaatcttggtgttctctcaaatttggagtacttgtaagttgt |
1445421 |
T |
|
| Q |
401 |
gaatcagatatgatatt |
417 |
Q |
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||||||||||||||||| |
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| T |
1445422 |
gaatcagatatgatatt |
1445438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 60 - 417
Target Start/End: Original strand, 1451263 - 1451614
Alignment:
| Q |
60 |
aagattgtttctttttagaacaggtgatgccctttttgcattcaggaacaacttagatgatcctaacaatgctcttcaaagttgggatgctacccttgtc |
159 |
Q |
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||||||| ||| |||||| ||||||||| ||| ||||||||| || ||||||| |||||||||||||||||||| ||||||||||| |||||||| || |
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| T |
1451263 |
aagattgcttcgttttagcacaggtgatatgcttattgcattcaagagcaacttaaatgatcctaacaatgctcttgaaagttgggattctacccttctc |
1451362 |
T |
|
| Q |
160 |
aatccctgcacgtggtttcatattacatgcagtggtggtagagtaatccgggtgtaagtcgttacgtcatttttacctgtgattttatgaatctttgtca |
259 |
Q |
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||||||||||| ||||||||| |||||||||| |||| |||||||||||| |||||||| |||| |||||||||| | |||||||||||||| ||||||| |
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| T |
1451363 |
aatccctgcacatggtttcatgttacatgcagcggtgatagagtaatccgtgtgtaagttgttatgtcatttttatcagtgattttatgaat-tttgtca |
1451461 |
T |
|
| Q |
260 |
atgtaatgaactgtttattattattaaaannnnnnnnnnnnnnnnnnngtatttggacagttatcttgcaaatgaaaacctttctggtaatctggtttca |
359 |
Q |
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| T |
1451462 |
acgtaatgaattgtttattattattatta-----ttattatttttgttgtatttggacagcgatcttggaaatgcaaacctttctggaatactggtttca |
1451556 |
T |
|
| Q |
360 |
aatcttggtgttctctcaaatttggagtacttgtaagttgtgaatcagatatgatatt |
417 |
Q |
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| T |
1451557 |
agcctagggggtctctcaaatttgcagtacttgtaagttgtgaatcagatatgatatt |
1451614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 50 - 196
Target Start/End: Original strand, 1425492 - 1425638
Alignment:
| Q |
50 |
tttgcaactaaagattgtttctttttagaacaggtgatgccctttttgcattcaggaacaacttagatgatcctaacaatgctcttcaaagttgggatgc |
149 |
Q |
| |
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||||||||| ||||||| |||||||||| ||||||||||| || |||||| | || |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
1425492 |
tttgcaactgaagattggttctttttagcacaggtgatgcactgaatgcattgaagagcaacttgaatgatcctaacaatgttcttcaaagttgggatgc |
1425591 |
T |
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| Q |
150 |
tacccttgtcaatccctgcacgtggtttcatattacatgcagtggtg |
196 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
1425592 |
tacccttgtcaatccttgcacgtggtttcatgttacatgcaatggtg |
1425638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 1432559 - 1432710
Alignment:
| Q |
39 |
tattaacgatgtttgcaactaaagattgtttctttttagaacaggtgatgccctttttgcattcaggaacaacttagatgatcctaacaatgctcttcaa |
138 |
Q |
| |
|
|||||| |||||||| |||| || |||| ||| |||||| ||||||||| ||||| ||||||| | || ||||||| |||||||||||| || | ||||| |
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| T |
1432559 |
tattaaggatgtttgaaactgaatattgcttccttttagcacaggtgatacccttattgcattgaagagcaacttaaatgatcctaacagtgtttttcaa |
1432658 |
T |
|
| Q |
139 |
agttgggatgctacccttgtcaatccctgcacgtggtttcatattacatgca |
190 |
Q |
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|||||| |||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
1432659 |
agttggaatgctaccaatgtcaatccctgcgagtggtttcatgttacatgca |
1432710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 1432816 - 1432918
Alignment:
| Q |
310 |
atttggacagttatcttgcaaatgaaaacctttctggtaatctggtttcaaatcttggtgttctctcaaatttggagtacttgtaagttgtgaatcagat |
409 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||||||| ||| ||||||| |||||| ||| ||||||||| |||||||||||| ||||| |||||| |
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| T |
1432816 |
atttggacagtgatcttgaaaatgcaaacctttctggtaccctgatttcaaaatttggtgatctttcaaatttgcagtacttgtaagctgtgactcagat |
1432915 |
T |
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| Q |
410 |
atg |
412 |
Q |
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||| |
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| T |
1432916 |
atg |
1432918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 1438336 - 1438465
Alignment:
| Q |
54 |
caactaaagattgtttctttttagaacaggtgatgccctttttgcattcaggaacaacttagatgatcct---aacaatgctcttcaaagttgggatgct |
150 |
Q |
| |
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||||| |||| || ||||||||||||||||||||||||| |||||| | ||||| ||| || ||||| ||||||| | || | | ||||||| || |
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| T |
1438336 |
caactgaagactgcttctttttagaacaggtgatgccctgaatgcattgaagaacagcttgaataatcctcctaacaatgtttttgacaattgggatact |
1438435 |
T |
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| Q |
151 |
acccttgtcaatccctgcacgtggtttcat |
180 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
1438436 |
acccttgtcaatccttgcacgtggtttcat |
1438465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 1425733 - 1425835
Alignment:
| Q |
310 |
atttggacagttatcttgcaaatgaaaacctttctggtaatctggtttcaaatcttggtgttctctcaaatttggagtacttgtaagttgtgaatcagat |
409 |
Q |
| |
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||||| ||||| |||||| ||||| | |||||||||| ||||||||| | || |||| |||||||||||| |||||||||||||||||| |||||| |
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| T |
1425733 |
atttgaacagtgatcttggaaatgcggaactttctggtacactggtttcacaactgggtgatctctcaaatttacagtacttgtaagttgtgattcagat |
1425832 |
T |
|
| Q |
410 |
atg |
412 |
Q |
| |
|
||| |
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| T |
1425833 |
atg |
1425835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1438250 - 1438290
Alignment:
| Q |
1 |
tcataatagaagaattcacctcctcccactcatgttaatat |
41 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1438250 |
tcataatagaagaattcaccttctcccactcatgttaatat |
1438290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 1438587 - 1438669
Alignment:
| Q |
322 |
atcttgcaaatgaaaacctttctggtaatctggtttcaaatcttggtgttctctcaaatttggagtacttgtaagttgtgaat |
404 |
Q |
| |
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|||||| ||||| |||||||||||||| ||||||||| | ||||| | |||||||||||| | | ||||||||||||||| |
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| T |
1438587 |
atcttggaaatgcaaacctttctggtacactggtttcacaacttggcgatctctcaaatttacataaattgtaagttgtgaat |
1438669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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