View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_17 (Length: 419)
Name: NF19836_high_17
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 935327 - 935062
Alignment:
| Q |
17 |
caaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935327 |
caaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttc |
935228 |
T |
|
| Q |
117 |
tttttactgatcttcaactatgatttattttgtttgatcgaggtgaagaacatacatattgctgaattttaagtttgtggatgttctaaggacatcaact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935227 |
tttttactgatcttcaactatgatttattttgtttgatcgaggtgaagaacatacttattgctgaattttaagtttgtggatgttctaaggacatcaact |
935128 |
T |
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| Q |
217 |
aatgagggtttgaatcaaaaaattagag-acagagtattttcatgtcttaagtactacattgttca |
281 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
935127 |
aatgagggtttgagtcaaaaaattagagaacagagtattttcatgtctcaagtactacattgttca |
935062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 925865 - 925741
Alignment:
| Q |
17 |
caaaaagtacttgagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttc |
116 |
Q |
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|||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925865 |
caaagagtacttgaaaaagttggttttcaaaaagagggagttcttagaaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttc |
925766 |
T |
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| Q |
117 |
tttttactgatcttcaactatgatt |
141 |
Q |
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||| ||||||| ||||||||||||| |
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| T |
925765 |
tttctactgatattcaactatgatt |
925741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 928185 - 928068
Alignment:
| Q |
29 |
gagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttctttttactgatc |
128 |
Q |
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||||||| |||||| ||||| ||||| ||||||||||||| | || | ||||||||||||||||||||||||||||| ||| |||||| || ||||| |
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| T |
928185 |
gagaaagctggtttccaaaaggagggaactcttaggaagtatttggtcatgaaaggaaaaagcagagatatgatcatgtttagtgttctttctaatgatc |
928086 |
T |
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| Q |
129 |
ttcaactatgatttattt |
146 |
Q |
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| ||||||||||| |||| |
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| T |
928085 |
tccaactatgattcattt |
928068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 939104 - 938987
Alignment:
| Q |
29 |
gagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttctttttactgatc |
128 |
Q |
| |
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||||||| |||||| ||||| ||||| |||| |||||||| | || | ||||||||||||||||||||||| || |||||| |||||| |||||||| |
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| T |
939104 |
gagaaagctggtttccaaaaggagggaactcttgggaagtatttggtcatgaaaggaaaaagcagagatatgattattttcagtgttctttctactgatc |
939005 |
T |
|
| Q |
129 |
ttcaactatgatttattt |
146 |
Q |
| |
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| ||||||||||| |||| |
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| T |
939004 |
tccaactatgattcattt |
938987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 923824 - 923712
Alignment:
| Q |
29 |
gagaaagttggttttcaaaaagaggggcttcttaggaagtatgtattctttaaaggaaaaagcagagatatgatcatgttcagtcttctttttactgatc |
128 |
Q |
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||||||| |||||| ||||||||||| |||||||||| ||| | || | ||||||||||| |||||||||||||| | |||| |||| |||||||||| |
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| T |
923824 |
gagaaagctggtttccaaaaagagggagttcttaggaaatatttggtcatgaaaggaaaaagtagagatatgatcatctccagtgttctctttactgatc |
923725 |
T |
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| Q |
129 |
ttcaactatgatt |
141 |
Q |
| |
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||||||||||| |
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| T |
923724 |
cccaactatgatt |
923712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 400
Target Start/End: Complemental strand, 934981 - 934942
Alignment:
| Q |
361 |
caaatcttccataactttgaaggaacctaattttattgat |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
934981 |
caaattttccataactttgaaggaacctaattttattgat |
934942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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