View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19836_high_19 (Length: 398)
Name: NF19836_high_19
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 1739259 - 1738881
Alignment:
| Q |
1 |
attttatgacacatgtaattgatttctcatttcnnnnnnncataagaaaatatctgtaagttagtagttttattactaatttacatatctcttgtttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1739259 |
attttatgacacatgtaattgatttctcatttctttttttcataagaaaatatctgtaagttagtagtgttattact---ttacatatctcttgtttgaa |
1739163 |
T |
|
| Q |
101 |
aacttagttcaccaaatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatagtaatagaaaaagtttaggag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1739162 |
aacttagttcaccaaatgaattacctactcgaaactgatatctttatacatg----aattgaacttgtttacagatataataatagaaaaagtttaggag |
1739067 |
T |
|
| Q |
201 |
gaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaatac |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1739066 |
gaatagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatac |
1738967 |
T |
|
| Q |
301 |
ttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatg |
386 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1738966 |
ttatgtgatcatgtcaaacccattggccacagattccaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatg |
1738881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 99 - 386
Target Start/End: Complemental strand, 1717667 - 1717384
Alignment:
| Q |
99 |
aaaacttagttcaccaaatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatagtaatagaaaaagtttagg |
198 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
1717667 |
aaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatg----aattgaacttgtttacagatacagtcatagaaaaagtttagg |
1717572 |
T |
|
| Q |
199 |
aggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaat |
298 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
1717571 |
aggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaat |
1717472 |
T |
|
| Q |
299 |
acttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717471 |
acttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctcatttgtcaaaggctttgataaagtagtccttgatg |
1717384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 155 - 386
Target Start/End: Complemental strand, 1748967 - 1748736
Alignment:
| Q |
155 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
254 |
Q |
| |
|
||||||||| |||| |||| ||| |||||| | |||||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||| | |
|
|
| T |
1748967 |
tgaattgaatttgtggacaggtatggtaataaaccaagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagt |
1748868 |
T |
|
| Q |
255 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctcatt |
354 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||| | ||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
1748867 |
attacaaggcagcttatgatgctgtgagaaaatacaacccagaggcttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctcatt |
1748768 |
T |
|
| Q |
355 |
tgtcaaaggctttgataaagtagtccttgatg |
386 |
Q |
| |
|
||| | ||||| | |||||||||||||||| |
|
|
| T |
1748767 |
tgttagtggcttcaacaaagtagtccttgatg |
1748736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 155 - 359
Target Start/End: Complemental strand, 1754283 - 1754079
Alignment:
| Q |
155 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
254 |
Q |
| |
|
||||||||| |||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
1754283 |
tgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatctagatagcctcaagaaat |
1754184 |
T |
|
| Q |
255 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctcatt |
354 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||| ||||||||||| | ||||||||||| |
|
|
| T |
1754183 |
attacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtcaaacccattggatgcagattctaaagtacttctctcatt |
1754084 |
T |
|
| Q |
355 |
tgtca |
359 |
Q |
| |
|
||||| |
|
|
| T |
1754083 |
tgtca |
1754079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University