View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19836_high_20 (Length: 384)

Name: NF19836_high_20
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19836_high_20
NF19836_high_20
[»] chr3 (5 HSPs)
chr3 (11-367)||(28230689-28231045)
chr3 (53-166)||(4559267-4559380)
chr3 (78-160)||(30406140-30406222)
chr3 (119-189)||(3440456-3440526)
chr3 (70-136)||(7957942-7958008)
[»] chr5 (6 HSPs)
chr5 (11-189)||(23409713-23409889)
chr5 (92-179)||(23878681-23878768)
chr5 (114-164)||(9190185-9190235)
chr5 (87-164)||(35415309-35415386)
chr5 (114-182)||(19847935-19848003)
chr5 (63-157)||(4632733-4632827)
[»] chr7 (4 HSPs)
chr7 (57-166)||(3743938-3744046)
chr7 (122-166)||(21839377-21839421)
chr7 (103-155)||(34793131-34793183)
chr7 (91-155)||(39882511-39882576)
[»] scaffold0128 (1 HSPs)
scaffold0128 (77-161)||(42176-42260)
[»] chr2 (6 HSPs)
chr2 (43-172)||(9547671-9547801)
chr2 (113-179)||(20681540-20681606)
chr2 (58-183)||(32991919-32992045)
chr2 (91-160)||(43657814-43657883)
chr2 (67-166)||(12808603-12808702)
chr2 (68-170)||(16316220-16316322)
[»] chr1 (5 HSPs)
chr1 (81-179)||(25268762-25268860)
chr1 (63-161)||(1073176-1073274)
chr1 (116-176)||(32794298-32794358)
chr1 (77-159)||(33261153-33261235)
chr1 (77-159)||(33281312-33281394)
[»] chr4 (4 HSPs)
chr4 (104-166)||(41996614-41996676)
chr4 (103-151)||(12716137-12716185)
chr4 (53-123)||(7320682-7320752)
chr4 (120-166)||(25708257-25708303)
[»] chr8 (2 HSPs)
chr8 (67-170)||(24997153-24997256)
chr8 (89-142)||(11217675-11217728)
[»] chr6 (4 HSPs)
chr6 (84-166)||(14361850-14361932)
chr6 (119-161)||(24954609-24954651)
chr6 (78-157)||(17111765-17111844)
chr6 (134-166)||(15107248-15107280)
[»] scaffold0002 (1 HSPs)
scaffold0002 (67-157)||(460315-460405)
[»] scaffold0792 (1 HSPs)
scaffold0792 (63-161)||(1512-1609)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 28230689 - 28231045
Alignment:
Q  11 cagagaagaaaactaaaatatacaacaaacgatcaataaaaagaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaa 110  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28230689 cagagaagaaagctaaaatatacaacaaacgatcaataaaaagaagcacaaattaaccaatacccacacataaaaaaggtttttgacacccgttatgaaa 28230788  T
Q  111 actataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaagaattaaaataacccaactaatt 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28230789 actataatgaaaaacaataaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaagaattaaaataacccaactaatt 28230888  T
Q  211 gtaatttttcatagaaaagaaaaaactattttggaacaaaataaagttgtacgtataaaaatgaagttgaatggtaaatcaggaaagtgaggagcagaca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28230889 gtaatttttcatagaaaagaaaaaactattttggaacaaaataaagtcgtacgtataaaaatgaagttgaatggtaaatcaggaaagtgaggagcagaca 28230988  T
Q  311 gaaattctatctaattaagtatatttgaatggcaagcaacattaatgatgatagaat 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28230989 gaaattctatctaattaagtatatttgaatggcaagcaacattaatgatgatagaat 28231045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 4559380 - 4559267
Alignment:
Q  53 gaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaa 152  Q
    |||||| |||||| |||||||||||| || ||||  | |||| ||| |  |||||||| ||||||||||||||||||||||||||||||||| | |||||    
T  4559380 gaagcataaattagccaatacccacatatgaaaataggttttagcatcaattatgaaagctataatgaaaaacaacaaatttagctttaaactatcaaaa 4559281  T
Q  153 ggaaagaagcttaa 166  Q
    |||||||| |||||    
T  4559280 ggaaagaaacttaa 4559267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 30406140 - 30406222
Alignment:
Q  78 acataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaa 160  Q
    |||| ||||||| || |||||||  | ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30406140 acatgaaaaagggttctggcaccaatcatgaaacttataatgaaaaacaacaaatttagctttaaaccactaaaaggaaagaa 30406222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 3440526 - 3440456
Alignment:
Q  119 gaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaaga 189  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||| ||| | |||||| |||| ||||    
T  3440526 gaaaaacaacaaatttagcttttaactaccaaaaggaaagaagtttaatattctccaaaagctgaagaaga 3440456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 7958008 - 7957942
Alignment:
Q  70 atacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttag 136  Q
    |||||||| || | ||| || ||||||||||  |||| |||||||| ||||||||||||||||||||    
T  7958008 atacccacgcacacaaatgggttttggcaccaattataaaaactatgatgaaaaacaacaaatttag 7957942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 23409889 - 23409713
Alignment:
Q  11 cagagaagaaaactaaaatatacaacaaacgatcaataaaaagaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaa 110  Q
    ||||||||||| |||||||||||| |||||  | |||| || |||||||||||||  |||||| |     ||||||| | ||||| ||||  ||||||||    
T  23409889 cagagaagaaagctaaaatatacaccaaacctttaatagaatgaagcacaaattaggcaatactctgg--taaaaaaagattttgccaccaattatgaaa 23409792  T
Q  111 actataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaaga 189  Q
     ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  23409791 gctacaatgaaaaacaacaaatttaattttaaaccaccaaaaggaaagaagcttaacattctccaaaagctgaacaaga 23409713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 23878768 - 23878681
Alignment:
Q  92 tttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 179  Q
    |||||||||  || ||||| ||||||||||||  |||||||||||| ||||||||| | ||||| |||||||||||||| | ||||||    
T  23878768 tttggcaccaattgtgaaagctataatgaaaattaacaaatttagccttaaaccactagaaggagagaagcttaacattctccaaaag 23878681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 9190235 - 9190185
Alignment:
Q  114 ataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagctt 164  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  9190235 ataattaaaaacaacaaatttagctttgaaccaccaaaagaaaagaagctt 9190185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 35415386 - 35415309
Alignment:
Q  87 aggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagctt 164  Q
    ||||||| ||||||  ||||||||   ||||| ||| |||||||| ||||||||||||||| |||||||||| |||||    
T  35415386 aggttttaggcaccatttatgaaacgaataattaaagacaacaaaattagctttaaaccacaaaaaggaaaggagctt 35415309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 19848003 - 19847935
Alignment:
Q  114 ataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttg 182  Q
    |||||||||||||||||| ||||||||| ||||  | ||||||||||| |||| | | |||||||||||    
T  19848003 ataatgaaaaacaacaaaattagctttataccatgagaaggaaagaagtttaatactcttcaaaagttg 19847935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 4632827 - 4632733
Alignment:
Q  63 ttaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaa 157  Q
    ||||||||| |||| ||| | |||||| || |||||||  | |||||| | |||||||||| ||| | | | |||||||||||||||||||||||    
T  4632827 ttaaccaatccccagacaaagaaaagggttatggcaccaatcatgaaagcgataatgaaaagcaatagaatgagctttaaaccaccaaaaggaaa 4632733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 3744046 - 3743938
Alignment:
Q  57 cacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaa 156  Q
    ||||||||| ||||||||| |||||||||| |||||| ||||||  |||||||| |||||||| |||||||||||||||| ||||||||| |||||| ||    
T  3744046 cacaaattagccaatacccgcacataaaaagggtttt-ggcaccaattatgaaagctataatgtaaaacaacaaatttagttttaaaccatcaaaagaaa 3743948  T
Q  157 agaagcttaa 166  Q
    ||||||||||    
T  3743947 agaagcttaa 3743938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 21839377 - 21839421
Alignment:
Q  122 aaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  21839377 aaacaactaatttagctttaaaccagcaaaaggaaagaagtttaa 21839421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 34793183 - 34793131
Alignment:
Q  103 ttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaagga 155  Q
    |||||||||| |||| |||| |||  |||||||||||||||||||||||||||    
T  34793183 ttatgaaaacaataacgaaatacataaaatttagctttaaaccaccaaaagga 34793131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 39882511 - 39882576
Alignment:
Q  91 ttttggcacccgttatgaaaactataatgaaaaaca-acaaatttagctttaaaccaccaaaagga 155  Q
    |||||||||| || |||||| ||||||||||||| | ||||  | |||||||||||||||||||||    
T  39882511 ttttggcaccagtgatgaaagctataatgaaaaaaatacaacatgagctttaaaccaccaaaagga 39882576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 42260 - 42176
Alignment:
Q  77 cacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 161  Q
    ||||||||||||| ||||||||||  |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42260 cacataaaaaaggattttggcaccgattataaaaagtataatgaaaaacaacaaatttagctttaaactaccaaaaggaaagaag 42176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 9547671 - 9547801
Alignment:
Q  43 tcaataaaaagaagcacaaattaaccaatacccacacataaaaaag-gtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagcttta 141  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||  | |||||||||   |||||||| || |||||||| || ||||| ||||| |||    
T  9547671 tcaacaaaaagaagcacaaattagccaatacccgcacataaaaaaaaggttttggcacaaattatgaaagctttaatgaaacactacaaacttagcctta 9547770  T
Q  142 aaccaccaaaaggaaagaagcttaacatttt 172  Q
    |||||||||||| |||||||||| |||||||    
T  9547771 aaccaccaaaagaaaagaagcttcacatttt 9547801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 20681540 - 20681606
Alignment:
Q  113 tataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 179  Q
    |||||||||||  |||||| | ||||||||||||||||||| |||||||||| | ||||| ||||||    
T  20681540 tataatgaaaagtaacaaaatgagctttaaaccaccaaaagaaaagaagcttgatattttccaaaag 20681606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 32992045 - 32991919
Alignment:
Q  58 acaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaaca-acaaatttagctttaaaccaccaaaaggaa 156  Q
    ||||||||  |||||||| ||||||| || |  ||||||||||  |||| ||| |||| || ||||| | ||| ||||||||||||||||||| |||||     
T  32992045 acaaattagtcaatacccgcacataagaatgagttttggcaccaattataaaagctatgataaaaaaaatacagatttagctttaaaccaccataaggat 32991946  T
Q  157 agaagcttaacatttttcaaaagttga 183  Q
    ||||  |||||||||| ||| ||||||    
T  32991945 agaattttaacattttacaatagttga 32991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 43657883 - 43657814
Alignment:
Q  91 ttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaa 160  Q
    ||||||||||  ||||||||   || || |||||||||||||||| ||||||||||||||||| ||||||    
T  43657883 ttttggcaccaattatgaaacaaatcattaaaaacaacaaatttaactttaaaccaccaaaagaaaagaa 43657814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 12808702 - 12808603
Alignment:
Q  67 ccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    ||||||||| ||||||| || || |||||||| |  |||||||| ||| ||| |||    ||| ||||||||||||||||||| ||||||||||| ||||    
T  12808702 ccaatacccgcacataagaatgggttttggcatcaattatgaaagctaaaataaaagtttacatatttagctttaaaccaccagaaggaaagaagtttaa 12808603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 16316322 - 16316220
Alignment:
Q  68 caatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaac 167  Q
    ||||| |||||||||| || || ||||| ||||  |||||||| ||||||| |||    ||| || |||||||||||||||| ||||| ||||| |||||    
T  16316322 caatagccacacataagaatgggttttgacaccaattatgaaagctataataaaagtttacagatgtagctttaaaccaccagaaggagagaagtttaac 16316223  T
Q  168 att 170  Q
    |||    
T  16316222 att 16316220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 25268860 - 25268762
Alignment:
Q  81 taaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 179  Q
    ||||||||| ||||||||||  ||||||||  |||||  ||||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||    
T  25268860 taaaaaaggattttggcaccaattatgaaacttataagaaaaaataacaaatttagctttaaaccaccaaaatgaaagaagcttaatattctccaaaag 25268762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 1073176 - 1073274
Alignment:
Q  63 ttaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 161  Q
    ||||| || ||||| ||||||||| || || || ||||  | |||||| |||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  1073176 ttaacaaacacccaaacataaaaatgggttatgacaccaatcatgaaatctataatgaaaagcaacaaaatgagctttaaaccaccaaaagaaaagaag 1073274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 32794358 - 32794298
Alignment:
Q  116 aatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaa 176  Q
    ||||| ||||||||||||  |||||| |||||||||||||||||||||| | |||||||||    
T  32794358 aatgataaacaacaaattgcgctttataccaccaaaaggaaagaagcttgatatttttcaa 32794298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 33261235 - 33261153
Alignment:
Q  77 cacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaaga 159  Q
    ||||||| ||||| |||||||||| ||| | ||||||||||||||||   ||||   |||| ||||||||||| |||||||||    
T  33261235 cacataacaaaggattttggcaccagttgtaaaaactataatgaaaagatacaacactagccttaaaccaccagaaggaaaga 33261153  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 33281394 - 33281312
Alignment:
Q  77 cacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaaga 159  Q
    ||||||| ||||| |||||||||| ||| | ||||||||||||||||   ||||   |||| ||||||||||| |||||||||    
T  33281394 cacataacaaaggattttggcaccagttgtaaaaactataatgaaaagatacaacactagccttaaaccaccagaaggaaaga 33281312  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 41996676 - 41996614
Alignment:
Q  104 tatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    |||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||| ||||    
T  41996676 tatgaaaattataatgaaaaacaataaatttggatttaaaccaccaaaaggaaagaagtttaa 41996614  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 12716185 - 12716137
Alignment:
Q  103 ttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaa 151  Q
    ||||||||||||||| ||||| ||||||||||| ||||| |||||||||    
T  12716185 ttatgaaaactataaggaaaagcaacaaatttaactttataccaccaaa 12716137  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 7320752 - 7320682
Alignment:
Q  53 gaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaa 123  Q
    |||||||| |||| ||||| | || ||| | ||| || |||||||||||||||||||||| ||||||||||    
T  7320752 gaagcacatattagccaattctcaaacacacaaatgggttttggcacccgttatgaaaacaataatgaaaa 7320682  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 25708303 - 25708257
Alignment:
Q  120 aaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    ||||||||| |||||| |||||||||||||||| |||||||| ||||    
T  25708303 aaaaacaactaatttaactttaaaccaccaaaatgaaagaagtttaa 25708257  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 24997153 - 24997256
Alignment:
Q  67 ccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    ||||||||| ||||||| || || ||||||||||  | |||||||||||||| |||    ||| ||||||||||||||||||| ||||| ||||| ||||    
T  24997153 ccaatacccgcacataagaatgggttttggcaccaatcatgaaaactataataaaagtttacagatttagctttaaaccaccagaaggagagaagtttaa 24997252  T
Q  167 catt 170  Q
    ||||    
T  24997253 catt 24997256  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 11217728 - 11217675
Alignment:
Q  89 gtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaa 142  Q
    ||||||||||||  |||||||||||||||||||||| | |||||||||||||||    
T  11217728 gtttttggcaccaattatgaaaactataatgaaaaatagcaaatttagctttaa 11217675  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 14361850 - 14361932
Alignment:
Q  84 aaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    |||||| ||||||||||  |||| ||||||||||| ||||||| || |||| |||||| |||||||||| |||||||| ||||    
T  14361850 aaaagggttttggcaccaattataaaaactataataaaaaacaccagattttgctttataccaccaaaaagaaagaagtttaa 14361932  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 24954609 - 24954651
Alignment:
Q  119 gaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 161  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  24954609 gaaaaacaacaaatttagctttaaaccaccaaaatgaaagaag 24954651  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 17111844 - 17111765
Alignment:
Q  78 acataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaa 157  Q
    ||||||||||||  |||||||||  ||||||||   |||   |||||||||||||||| |||||||||||||||||||||    
T  17111844 acataaaaaagggctttggcaccaattatgaaacaaatacataaaaacaacaaatttatctttaaaccaccaaaaggaaa 17111765  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 15107280 - 15107248
Alignment:
Q  134 tagctttaaaccaccaaaaggaaagaagcttaa 166  Q
    ||||||||||||||||||| |||||||||||||    
T  15107280 tagctttaaaccaccaaaaagaaagaagcttaa 15107248  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 460315 - 460405
Alignment:
Q  67 ccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaa 157  Q
    ||||||||||||||| |   ||| |||| ||||  |||||||||   | ||| |||||||||||| |||||||||||||||||||||||||    
T  460315 ccaatacccacacatgatgtaggattttagcactagttatgaaacgaaaaattaaaaacaacaaaattagctttaaaccaccaaaaggaaa 460405  T

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Target: scaffold0792 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0792
Description:

Target: scaffold0792; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 1512 - 1609
Alignment:
Q  63 ttaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 161  Q
    ||||| || ||||| ||||||||| || || || ||||  | |||||| |||||||||||| ||||||| | ||| ||||||||||||||| |||||||    
T  1512 ttaacaaacacccaaacataaaaatgggttatgacaccaatcatgaaatctataatgaaaagcaacaaaatgagc-ttaaaccaccaaaagaaaagaag 1609  T

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