View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_23 (Length: 379)
Name: NF19836_high_23
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 46016567 - 46016655
Alignment:
| Q |
289 |
atcatgcactttaccttcccctcttccagtttcctccttctactttgttcatggtggaaagatccaatgttgttaagctcttcttcttc |
377 |
Q |
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| T |
46016567 |
atcatgcactttaccttcccctcttccaatttcctccttctactttgttcatggtggaaagacccgatgttgttaagctcttcttcttc |
46016655 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 9738866 - 9738915
Alignment:
| Q |
292 |
atgcactttaccttcccctcttccagtttcctccttctactttgttcatg |
341 |
Q |
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| T |
9738866 |
atgcactttacctccccctctgccagtttcctccatttactttgttcatg |
9738915 |
T |
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