View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_27 (Length: 360)
Name: NF19836_high_27
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 45274454 - 45274803
Alignment:
| Q |
7 |
tagattatacttgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggcca |
106 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274454 |
tagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggcca |
45274553 |
T |
|
| Q |
107 |
tcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttccct |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274554 |
tcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttccct |
45274653 |
T |
|
| Q |
207 |
taggataagaggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcg |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274654 |
taggataagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcg |
45274753 |
T |
|
| Q |
307 |
ttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274754 |
ttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
45274803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 45282705 - 45283044
Alignment:
| Q |
17 |
ttgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccataca |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45282705 |
ttgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtgacaatggtccttgcagggccatcaccataca |
45282804 |
T |
|
| Q |
117 |
taagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataaga |
216 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
45282805 |
taagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaaga |
45282904 |
T |
|
| Q |
217 |
ggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcatttta |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45282905 |
ggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacagcattaggcataatatttgctctccaattttttcgttgcatttta |
45283004 |
T |
|
| Q |
317 |
gccaaaagcttgcgatcagaagcagagatccatgaagggt |
356 |
Q |
| |
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| T |
45283005 |
gccaaaagcttgcgatcagaagaagagatccatgaagggt |
45283044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 70 - 356
Target Start/End: Original strand, 45270984 - 45271270
Alignment:
| Q |
70 |
gttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacacca |
169 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
45270984 |
gttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccg |
45271083 |
T |
|
| Q |
170 |
gccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaa |
269 |
Q |
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|||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45271084 |
gccttaacgtagataacatatctgtctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaa |
45271183 |
T |
|
| Q |
270 |
cagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
356 |
Q |
| |
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| T |
45271184 |
cagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggt |
45271270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 45294093 - 45294432
Alignment:
| Q |
17 |
ttgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccataca |
116 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||| || | |||||||||||||||| |
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| T |
45294093 |
ttgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccataca |
45294192 |
T |
|
| Q |
117 |
taagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataaga |
216 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| |||||||| |||| |
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| T |
45294193 |
taagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatagtatatctgcctttgttccccttagggtaagc |
45294292 |
T |
|
| Q |
217 |
ggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcatttta |
316 |
Q |
| |
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||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| || || |||||||||||| |||| || ||||||| |
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| T |
45294293 |
ggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcatttta |
45294392 |
T |
|
| Q |
317 |
gccaaaagcttgcgatcagaagcagagatccatgaagggt |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45294393 |
gccaaaagcttgcgatcagaagcagagatccatgaagggt |
45294432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 45303053 - 45303392
Alignment:
| Q |
17 |
ttgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccataca |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||||||||| || | |||||||||||||||| |
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|
| T |
45303053 |
ttgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccataca |
45303152 |
T |
|
| Q |
117 |
taagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataaga |
216 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| |||||||| |||| |
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| T |
45303153 |
taagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatagtatatctgcctttgttccccttagggtaagc |
45303252 |
T |
|
| Q |
217 |
ggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcatttta |
316 |
Q |
| |
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||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| || || |||||||||||| |||| || ||||||| |
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| T |
45303253 |
ggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcatttta |
45303352 |
T |
|
| Q |
317 |
gccaaaagcttgcgatcagaagcagagatccatgaagggt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45303353 |
gccaaaagcttgcgatcagaagcagagatccatgaagggt |
45303392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 38588222 - 38588302
Alignment:
| Q |
137 |
ttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataagag |
217 |
Q |
| |
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||||||| |||||||| ||||||||||| |||||||| || ||||||| || ||||||||| |||||||||||||||| |
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|
| T |
38588222 |
ttgggaatggtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataagag |
38588302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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