View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19836_high_31 (Length: 345)
Name: NF19836_high_31
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 55 - 341
Target Start/End: Original strand, 45274517 - 45274803
Alignment:
| Q |
55 |
gttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacacca |
154 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45274517 |
gttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacacca |
45274616 |
T |
|
| Q |
155 |
gccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaa |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45274617 |
gccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaa |
45274716 |
T |
|
| Q |
255 |
cagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274717 |
cagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
45274803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 45270951 - 45271270
Alignment:
| Q |
22 |
ggcactgttctgtatattggtaccggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatcc |
121 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45270951 |
ggcagtgttctgtgtgttggtaccggccatttggttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctcc |
45271050 |
T |
|
| Q |
122 |
ttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggattg |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
45271051 |
ttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgtctttgtttcccttagggtaagaggcaagagcagcctggatgg |
45271150 |
T |
|
| Q |
222 |
ttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcaga |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45271151 |
ttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagcttgcgaccaga |
45271250 |
T |
|
| Q |
322 |
agcagagatccatgaagggt |
341 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
45271251 |
agaagagatccatgaagggt |
45271270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 57 - 341
Target Start/End: Original strand, 45282760 - 45283044
Alignment:
| Q |
57 |
tcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagc |
156 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
45282760 |
tctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
45282859 |
T |
|
| Q |
157 |
cttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaaca |
256 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45282860 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
45282959 |
T |
|
| Q |
257 |
gcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
341 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45282960 |
gcattaggcataatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagaagagatccatgaagggt |
45283044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 71 - 341
Target Start/End: Original strand, 45294162 - 45294432
Alignment:
| Q |
71 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataa |
170 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45294162 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45294261 |
T |
|
| Q |
171 |
aatacctgcctttgtttcccttaggataagaggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaacagcattaggcctaat |
270 |
Q |
| |
|
||| ||||||||||| |||||||| |||| ||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| || || |
|
|
| T |
45294262 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45294361 |
T |
|
| Q |
271 |
atttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
341 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294362 |
atttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
45294432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 71 - 341
Target Start/End: Original strand, 45303122 - 45303392
Alignment:
| Q |
71 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataa |
170 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45303122 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45303221 |
T |
|
| Q |
171 |
aatacctgcctttgtttcccttaggataagaggcaagagcagcctggattgttttaaattggccgctaccatcattggcaacaacagcattaggcctaat |
270 |
Q |
| |
|
||| ||||||||||| |||||||| |||| ||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| || || |
|
|
| T |
45303222 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45303321 |
T |
|
| Q |
271 |
atttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
341 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303322 |
atttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggt |
45303392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 38588222 - 38588302
Alignment:
| Q |
122 |
ttgggaacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttgtttcccttaggataagag |
202 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||| || ||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
38588222 |
ttgggaatggtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataagag |
38588302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University